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structural_polyprotein

Euk-Vir

Middelburg_virus

structural_polyprotein__YP_009058893__Middelburg_virus__11023

Identity

Accession:
YP_009058893 ↗
Protein ID:
structural_polyprotein
Kingdom:
euk

Quality

77.0 mean pLDDT

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 113-274
PDB
Domain cluster: rep: 100_kDa_protein__YP_008130303__Citrus_vein_enation_virus__1301220__D379-571
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00944.26 best Peptidase_S3 320.5 2.40e-96 96.9% 100.0%
D2 high residues 602-675
PDB
Domain cluster: rep: E2_protein__NP_740659__Sleeping_disease_virus__78540__D289-352
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00943.26 best Alpha_E2_glycop 89.3 3.30e-25 100.0% 18.4%
D3 high residues 1109-1207
PDB
Domain cluster: rep: polyprotein__YP_009666886__Leanyer_virus__999729__D1233-1338
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01589.22 best Alpha_E1_glycop 130.4 1.20e-37 100.0% 19.6%
D4 medium residues 350-492
PDB
Domain cluster: rep: E2_protein__NP_819006__Semliki_Forest_virus__11033__D2-168
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00943.26 best Alpha_E2_glycop 208.9 1.50e-61 99.3% 35.2%
D5 medium residues 513-566
PDB
Domain cluster: rep: polyprotein__BAA92847__Sagiyama_virus__59303__D507-561
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00943.26 best Alpha_E2_glycop 53.9 1.80e-14 100.0% 13.2%
D6 medium residues 819-862_948-985_1091-1106
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF01589.22 best Alpha_E1_glycop 63.0 3.10e-17 46.9% 8.9%
PF01589.22 Alpha_E1_glycop 25.8 5.80e-06 42.9% 7.9%
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1rerA01 2.60.98.10 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Tick-borne Encephalitis virus Glycoprotein, domain 1 0.81 71.0 6.45e-01 93.9% 93.7%
2obdA02 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.68 51.0 4.08e-01 78.6% 76.2%
2gtlN02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.68 56.0 4.67e-01 89.8% 68.2%
2ldkA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.67 52.0 4.29e-01 81.6% 65.7%
2gtlM02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.66 55.0 4.62e-01 89.8% 69.9%
2gtlO02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.66 55.0 4.64e-01 89.8% 69.9%
1bp1A01 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.66 50.0 4.08e-01 80.6% 81.7%
1y0gA00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.65 52.0 4.39e-01 87.8% 82.8%
3rd6A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.64 54.0 4.69e-01 89.8% 72.2%
1wubA00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.64 52.0 4.37e-01 90.8% 89.2%
5ay6A01 2.60.98.20 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Flagellar hook protein FlgE 0.63 55.0 4.57e-01 96.9% 100.0%
2pcsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.61 46.0 3.98e-01 79.6% 73.7%
3qq2B00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.61 50.0 3.74e-01 89.8% 84.8%
2oojA00 2.40.350.10 Mainly Beta › Beta Barrel › AOC barrel-like › SO1590-like 0.60 53.0 4.87e-01 99.0% 96.2%
4qhzA00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.60 49.0 3.68e-01 87.8% 60.0%
3exzB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.59 46.0 3.95e-01 81.6% 98.0%
2z4hA01 2.40.128.300 Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain 0.58 44.0 4.82e-01 82.7% 100.0%
7vpjA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.58 45.0 3.67e-01 82.7% 88.2%
3e99A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 47.0 4.09e-01 86.7% 94.6%
2ffsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 43.0 3.78e-01 78.6% 78.6%
2lf2A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 50.0 4.11e-01 94.9% 60.0%
6xmtA02 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.57 43.0 3.68e-01 82.7% 85.1%
1q6wG00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.56 43.0 3.70e-01 80.6% 98.0%
3tw8A01 3.30.450.200 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin module 0.55 44.0 3.92e-01 98.0% 60.9%
4ffuB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 41.0 3.56e-01 78.6% 94.7%
6xrbA01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.55 39.0 3.50e-01 86.7% 51.8%
2in5A00 2.40.360.10 Mainly Beta › Beta Barrel › YmcC-like fold › YmcC-like 0.55 46.0 3.76e-01 94.9% 75.9%
3bryA00 2.40.160.60 Mainly Beta › Beta Barrel › Porin › Outer membrane protein transport protein (OMPP1/FadL/TodX) 0.54 47.0 3.19e-01 98.0% 66.3%
2pfcA00 3.10.129.30 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Rv0098, thioesterase-like hot dog domain 0.54 38.0 3.29e-01 73.5% 96.9%
2jpiA00 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.53 35.0 3.62e-01 100.0% 68.8%
2oc3A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.53 41.0 2.98e-01 81.6% 51.6%
4fpwB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 45.0 3.83e-01 92.9% 66.5%
8gn6A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.53 42.0 2.93e-01 86.7% 43.6%
3f6gA02 3.30.160.340 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 34.0 4.02e-01 77.6% 100.0%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 34.0 3.91e-01 82.7% 90.3%
2mj7A00 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.52 40.0 3.58e-01 100.0% 57.4%
1t17A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 45.0 3.99e-01 100.0% 80.4%
1tluA00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.52 41.0 3.88e-01 100.0% 71.8%
2bbaA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 44.0 3.66e-01 98.0% 95.1%
3rnsA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 36.0 3.66e-01 96.9% 74.0%
2ozjA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 36.0 3.54e-01 98.0% 67.9%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
406733 5090.1.1.3 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › Alpha_E1_glycop 0.95 92.0 6.22e-01 100.0% 98.0%
4840163 11.1.1.28 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Alpha_E1_glycop 0.94 90.0 6.10e-01 99.0% 98.0%
5028250 5090.1.1.0 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.70 62.0 6.10e-01 96.9% 94.3%
861 9.3.1.3 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Eryth_link_C 0.68 56.0 5.14e-01 89.8% 90.6%
3996943 331.3.1.17 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.65 45.0 3.95e-01 70.4% 69.0%
5030457 5090.1.1.0 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.65 54.0 5.20e-01 89.8% 96.4%
3957386 883.1.1.0 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.64 48.0 3.96e-01 79.6% 72.2%
864 9.5.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein TT1927B › Hypothetical protein TT1927B › YceI 0.64 52.0 4.37e-01 90.8% 89.2%
3840054 5084.1.1.15 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP 0.62 49.0 4.40e-01 85.7% 98.6%
3281482 222.1.1.34 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › AvrD 0.62 49.0 4.36e-01 83.7% 99.3%
3212698 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.61 48.0 3.97e-01 84.7% 65.6%
874 9.13.1.3 ↗ beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › DUF3224 0.60 53.0 4.87e-01 99.0% 96.2%
3818841 331.3.1.17 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.60 48.0 3.90e-01 86.7% 68.4%
4934107 331.3.1.7 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG 0.60 47.0 4.09e-01 84.7% 75.5%
3245577 11.10.1.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.60 54.0 4.75e-01 100.0% 91.7%
860 9.3.1.3 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Eryth_link_C 0.59 48.0 4.54e-01 89.8% 93.4%
3702988 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.59 49.0 4.80e-01 100.0% 84.8%
3528889 4096.1.1.1 ↗ a+b two layers › NAP-like › NAP-like › NAP-like › NAP 0.59 43.0 3.35e-01 78.6% 58.3%
5073592 222.1.1.1 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydratas 0.58 42.0 3.74e-01 75.5% 97.9%
3957467 222.1.1.7 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › FcoT 0.58 45.0 3.70e-01 82.7% 81.0%
3275976 11.10.1.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.58 51.0 4.66e-01 98.0% 97.7%
3462090 5.1.3.144 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.57 44.0 3.00e-01 82.7% 25.8%
3217506 9.1.1.50 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF7042 0.54 45.0 4.23e-01 90.8% 81.7%
2491389 5.1.3.19 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira 0.52 41.0 3.41e-01 86.7% 54.1%
3994956 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.51 39.0 2.84e-01 83.7% 31.5%
3925444 5087.3.1.0 ↗ beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C 0.51 38.0 3.08e-01 81.6% 76.6%
3714739 4252.1.1.10 ↗ beta barrels › AttH-like › AttH-like › AttH-like › DUF2804 0.50 41.0 3.70e-01 89.8% 79.9%