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structural_protein_2
Euk-VirRotavirus_C
structural_protein_2__YP_392489__Rotavirus_C__36427
Identity
- Accession:
- YP_392489 ↗
- Protein ID:
- structural_protein_2
- Kingdom:
- euk
Quality
47.6
mean pLDDT
Taxonomy
Orthornavirae›
Duplornaviricota›
Resentoviricetes›
Reovirales›
Sedoreoviridae›
Rotavirus›
Rotavirus_C
TaxID: 36427
Cluster
View cluster (5 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 374-593
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05087.17 best | Rota_VP2 | 441.2 | 1.20e-131 | 100.0% | 24.7% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1yo7A00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.61 | 34.0 | 4.43e-01 | 81.4% | 98.3% |
| 3i9yA00 | 1.20.58.920 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 34.0 | 3.36e-01 | 85.9% | 54.6% |
| 3iqcA00 | 1.20.120.340 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS | 0.56 | 28.0 | 3.67e-01 | 85.0% | 85.7% |
| 3unoE00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.54 | 34.0 | 3.84e-01 | 88.6% | 80.2% |
| 1nfvA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.54 | 36.0 | 4.01e-01 | 78.2% | 86.4% |
| 3u3iA02 | 1.20.58.1110 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 27.0 | 3.67e-01 | 76.8% | 100.0% |
| 2lqgA00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.51 | 32.0 | 3.89e-01 | 79.1% | 96.4% |
| 3qc1A01 | 1.25.40.540 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TAP42-like family | 0.50 | 31.0 | 3.62e-01 | 83.2% | 86.8% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2589759 | 4064.1.1.2 ↗ | a+b complex topology › Inner layer core protein p3-related › Inner layer core protein p3-related › Inner layer core protein p3-related › Rota_VP2 | 0.92 | 90.0 | 5.80e-01 | 100.0% | 26.6% |
| 3393338 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.59 | 37.0 | 4.27e-01 | 82.7% | 86.9% |
| 3878975 | 633.21.1.23 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › CD20 | 0.55 | 35.0 | 4.17e-01 | 84.5% | 97.9% |
| 3809724 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.55 | 29.0 | 3.49e-01 | 73.2% | 76.4% |
| 3845930 | 633.23.1.22 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL | 0.54 | 34.0 | 4.06e-01 | 81.8% | 95.0% |
| 4648005 | 150.1.1.100 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › TMD0_ABC | 0.54 | 33.0 | 3.62e-01 | 82.3% | 71.7% |
| 3939 | 150.1.1.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Ferritin | 0.54 | 36.0 | 4.02e-01 | 78.2% | 86.4% |
| 3751245 | 633.23.1.8 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › DUF4534 | 0.54 | 36.0 | 4.26e-01 | 85.9% | 99.3% |
| 4981470 | 150.1.1.3 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Rubrerythrin | 0.53 | 36.0 | 4.01e-01 | 73.2% | 89.7% |
| 3868831 | 174.1.1.43 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › CD20 | 0.53 | 34.0 | 3.89e-01 | 84.1% | 86.7% |
| 4034237 | 5055.1.1.0 ↗ | extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel | 0.52 | 28.0 | 3.58e-01 | 84.1% | 92.2% |
| 3485660 | 109.4.1.235 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SRP68 | 0.52 | 36.0 | 3.50e-01 | 89.1% | 61.2% |
| 3491897 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.52 | 37.0 | 3.95e-01 | 84.1% | 84.9% |
| 4944401 | 150.1.1.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Ferritin | 0.51 | 32.0 | 3.70e-01 | 82.7% | 86.5% |
| 5075987 | 150.1.1.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Ferritin | 0.51 | 31.0 | 3.68e-01 | 81.4% | 88.0% |
| 3612806 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.50 | 33.0 | 3.85e-01 | 82.7% | 95.3% |
D2
medium
residues 214-306
D3
medium
residues 704-794
D4
medium
residues 795-884