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structural_protein_VP1

Euk-Vir

Culex_pipiens_densovirus

structural_protein_VP1__YP_002887627__Culex_pipiens_densovirus__185638

Identity

Accession:
YP_002887627 ↗
Protein ID:
structural_protein_VP1
Kingdom:
euk

Quality

51.9 mean pLDDT

Taxonomy

Shotokuvirae› Cossaviricota› Quintoviricetes› Piccovirales› Parvoviridae› Protoambidensovirus› Culex_pipiens_densovirus

TaxID: 185638

Cluster

View cluster (10 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 153-222
PDB
D2 high residues 307-375_390-525_607-640_652-672
PDB
Domain cluster: rep: viral_polypeptide_VP4__NP_046818__Diatraea_saccharalis_densovirus__72003__D35-143_249-273_312-405
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF02336.22 best Denso_VP4 78.4 9.80e-22 63.5% 61.3%
PF02336.22 Denso_VP4 42.3 9.50e-11 20.8% 21.5%
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1auyB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.67 39.0 4.49e-01 100.0% 76.7%
2ws9201 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.67 42.0 4.79e-01 100.0% 82.1%
3napB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.67 42.0 4.30e-01 100.0% 64.4%
1stmA00 2.60.120.220 Mainly Beta › Sandwich › Jelly Rolls › Satellite virus coat domain 0.65 33.0 4.40e-01 100.0% 87.9%
4qc8A00 2.170.30.10 Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 0.65 62.0 4.88e-01 100.0% 84.3%
1c8dA00 2.170.30.10 Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 0.64 61.0 4.68e-01 100.0% 85.8%
1f2nC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.64 42.0 4.63e-01 100.0% 79.7%
2g8gA00 2.170.30.10 Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 0.64 60.0 4.70e-01 100.0% 85.1%
2ws9300 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.63 41.0 4.35e-01 100.0% 73.5%
1f15B00 2.60.120.530 Mainly Beta › Sandwich › Jelly Rolls › Cucumovirus coat protein, subunit A 0.63 35.0 4.04e-01 100.0% 72.6%
6jhsA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.63 41.0 4.13e-01 100.0% 63.8%
1ng0C00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.63 42.0 4.57e-01 100.0% 79.8%
4oq8A00 2.60.120.220 Mainly Beta › Sandwich › Jelly Rolls › Satellite virus coat domain 0.62 30.0 3.93e-01 99.6% 80.6%
5jzgA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.62 38.0 4.11e-01 100.0% 68.6%
4rs5A00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.62 41.0 4.41e-01 100.0% 76.9%
4p02B01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.61 29.0 3.93e-01 98.8% 85.7%
5c8cB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.61 43.0 4.14e-01 100.0% 64.0%
2ztnA01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.60 40.0 4.58e-01 100.0% 90.0%
3jb4C00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.59 37.0 3.89e-01 100.0% 66.8%
4qpiC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.58 39.0 4.07e-01 100.0% 71.5%
4devD01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 28.0 3.94e-01 98.8% 94.4%
3irpX02 2.60.40.1290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 30.0 3.83e-01 99.6% 85.1%
1nziA01 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.57 26.0 3.76e-01 99.6% 94.7%
6eiwA01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.57 40.0 4.55e-01 100.0% 95.3%
1p8jA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 28.0 3.75e-01 99.6% 89.4%
1gnyA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 28.0 3.60e-01 100.0% 79.7%
2wq4A01 2.60.120.760 Mainly Beta › Sandwich › Jelly Rolls › 0.56 29.0 3.90e-01 99.2% 96.1%
6s0tA01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.56 29.0 3.03e-01 99.2% 50.2%
1o59A01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 29.0 3.44e-01 100.0% 74.0%
4oumA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.53 27.0 3.72e-01 99.6% 94.7%
4cp9A00 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.53 26.0 3.72e-01 98.8% 98.3%
8b38A01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.53 41.0 4.35e-01 99.6% 91.2%
4zchA01 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.51 27.0 3.62e-01 98.1% 98.5%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3106452 10.2.1.28 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Denso_VP4 0.88 86.0 7.09e-01 100.0% 83.6%
1197 10.2.1.28 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Denso_VP4 0.87 85.0 7.00e-01 100.0% 83.6%
1112407 10.2.1.28 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Denso_VP4 0.83 81.0 6.93e-01 100.0% 83.9%
1034414 10.2.1.16 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_NS1 0.73 71.0 5.90e-01 100.0% 79.4%
296002 10.2.1.15 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Tymo_coat 0.67 39.0 4.48e-01 100.0% 76.2%
3344591 10.2.1.81 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › MP 0.67 36.0 4.04e-01 100.0% 64.9%
5083101 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.67 30.0 4.40e-01 100.0% 91.7%
3938968 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.66 29.0 4.38e-01 98.5% 93.9%
2862065 10.2.1.15 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Tymo_coat 0.64 37.0 4.41e-01 100.0% 82.9%
2995239 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.63 27.0 3.93e-01 98.8% 85.6%
3314257 10.32.1.193 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › MP 0.63 35.0 4.16e-01 99.6% 77.7%
4106399 10.12.1.107 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PF27522 0.62 36.0 4.64e-01 89.6% 100.0%
3238880 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.62 30.0 4.19e-01 98.1% 92.3%
3390429 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.61 32.0 4.23e-01 99.2% 90.3%
3597814 10.32.1.3 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.61 32.0 4.10e-01 98.8% 86.0%
4951619 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.60 27.0 3.84e-01 99.2% 86.3%
3786014 10.32.1.237 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Mid1 0.60 33.0 4.33e-01 97.7% 96.4%
2044957 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.60 40.0 4.13e-01 100.0% 69.6%
5039888 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.60 27.0 3.83e-01 99.6% 87.2%
4944751 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.59 27.0 3.89e-01 100.0% 92.5%
5006272 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.58 32.0 3.97e-01 100.0% 83.0%
3231215 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.58 27.0 3.79e-01 97.7% 88.8%
5025469 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.58 27.0 3.66e-01 98.8% 83.7%
4930825 10.48.1.0 ↗ beta sandwiches › jelly-roll › Camelysin metallo-endopeptidase-like › Camelysin metallo-endopeptidase-like 0.58 30.0 3.85e-01 99.6% 83.2%
178766 10.2.1.53 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › IHHNV_capsid 0.57 51.0 4.88e-01 100.0% 81.3%
5042255 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.55 29.0 3.92e-01 99.2% 95.6%
1548159 10.32.1.67 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Glyco_hydro_78_N 0.55 28.0 3.35e-01 100.0% 70.5%
4968615 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.55 29.0 3.93e-01 99.6% 97.0%
3484435 10.32.1.3 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.55 30.0 3.87e-01 99.2% 91.3%
5039236 10.1.2.191 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › CBM60 0.55 28.0 3.72e-01 98.8% 89.3%
5032741 10.2.1.75 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › CBM96 0.53 31.0 3.77e-01 99.6% 86.9%
4256871 10.32.1.18 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Endotoxin_C 0.53 29.0 3.37e-01 98.8% 73.6%
2579092 10.2.1.44 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › CRPV_capsid 0.53 40.0 4.01e-01 100.0% 76.0%
3364460 10.32.1.203 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.52 29.0 3.76e-01 99.6% 95.2%
5009585 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.52 28.0 3.51e-01 99.6% 83.5%
4028561 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 30.0 3.73e-01 99.6% 90.3%
3774505 10.2.1.5 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide 0.51 32.0 3.33e-01 100.0% 65.1%
3322222 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 34.0 3.99e-01 99.6% 93.5%
3294967 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 26.0 3.09e-01 99.6% 69.4%