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structural_protein_VP1
Euk-VirRotavirus_C
structural_protein_VP1__YP_392464__Rotavirus_C__36427
Identity
- Accession:
- YP_392464 ↗
- Protein ID:
- structural_protein_VP1
- Kingdom:
- euk
Quality
59.7
mean pLDDT
Taxonomy
Orthornavirae›
Duplornaviricota›
Resentoviricetes›
Reovirales›
Sedoreoviridae›
Rotavirus›
Rotavirus_C
TaxID: 36427
Cluster
View cluster (29 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 735-847
D2
medium
residues 92-112_140-250_288-344
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02123.22 best | RdRP_4 | 35.1 | 1.00e-08 | 77.2% | 19.4% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1s3qG00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.61 | 27.0 | 2.92e-01 | 87.3% | 46.6% |
| 3am6A00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.55 | 46.0 | 4.34e-01 | 88.9% | 81.2% |
| 7e4gA01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.54 | 45.0 | 4.50e-01 | 88.9% | 85.3% |
| 1xioA00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.52 | 43.0 | 4.14e-01 | 88.9% | 81.6% |
| 5zw7A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.51 | 34.0 | 3.82e-01 | 88.9% | 84.9% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 223785 | 4963.1.1.1 ↗ | alpha complex topology › N-terminal additional helical subdomain in reovirus polymerase lambda3 › N-terminal additional helical subdomain in reovirus polymerase lambda3 › N-terminal additional helical subdomain in reovirus polymerase lambda3 › RdRP_4 | 0.86 | 83.0 | 6.62e-01 | 100.0% | 76.9% |
| 3728941 | 1174.1.1.2 ↗ | alpha complex topology › Potassium channel TMEM175 › Potassium channel TMEM175 › Potassium channel TMEM175 › LtrA | 0.53 | 38.0 | 3.85e-01 | 72.0% | 80.5% |
| 5064090 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.52 | 37.0 | 4.17e-01 | 87.8% | 95.7% |
| 5081991 | 5067.1.1.0 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain | 0.51 | 39.0 | 4.25e-01 | 88.4% | 95.6% |
| 4825592 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.51 | 40.0 | 4.16e-01 | 87.8% | 89.5% |
D3
medium
residues 251-287_496-530_591-691
Domain cluster:
rep: VP1__YP_002302227__Rotavirus_A__28875__D236-335_616-689
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02123.22 best | RdRP_4 | 73.7 | 2.20e-20 | 59.5% | 17.0% |
D4
medium
residues 345-495_531-590
Domain cluster:
rep: VP1__YP_002302227__Rotavirus_A__28875__D336-386_450-491_506-597
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02123.22 best | RdRP_4 | 82.5 | 4.40e-23 | 72.5% | 27.3% |
D5
medium
residues 873-916_1013-1077
D6
medium
residues 917-1012