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structural_protein

Euk-Vir

Rudphi_virus_5_Viruses.

structural_protein__YP_009553174__Rudphi_virus_5_Viruses.__X

Identity

Accession:
YP_009553174 ↗
Protein ID:
structural_protein
Kingdom:
euk

Quality

84.0 mean pLDDT

Cluster

View cluster (173 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 47-212
PDB
Domain cluster: rep: structural_polyprotein__YP_009333175__Bastrovirus-like_virus_VietNam_Bat_17819_21__1906170__D141-305
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00073.27 best Rhv 28.9 1.20e-06 83.1% 57.3%
D2 high residues 341-531_557-580
PDB
Domain cluster: rep: putative_capsid_protein__YP_009407904__Lasius_neglectus_virus_1__2018501__D51-89_108-371
D3 medium residues 595-675_735-767
PDB
Domain cluster: rep: hypothetical_protein_2__YP_009333555__Beihai_picorna-like_virus_14__1922556__D576-718
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8b38A01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.84 79.0 6.14e-01 100.0% 77.9%
5mqcC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.68 63.0 4.73e-01 100.0% 56.2%
6eiwA01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.66 61.0 5.08e-01 100.0% 81.2%
5aooC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.63 58.0 4.63e-01 100.0% 57.3%
1tme300 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.62 57.0 4.47e-01 100.0% 57.8%
3cjiB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.62 57.0 4.41e-01 100.0% 58.8%
5k0uB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.61 57.0 4.42e-01 100.0% 57.4%
4qpiB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.61 56.0 4.49e-01 100.0% 55.3%
2gh8A01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.60 56.0 4.58e-01 100.0% 56.9%
1ollA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 31.0 3.37e-01 83.3% 57.9%
1ihmB01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.59 55.0 4.37e-01 100.0% 54.5%
1fmd200 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.59 54.0 4.30e-01 100.0% 52.8%
2y26A01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.58 52.0 3.72e-01 100.0% 47.7%
1pu4A03 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.51 45.0 3.13e-01 100.0% 87.7%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2579092 10.2.1.44 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › CRPV_capsid 0.89 85.0 6.22e-01 100.0% 64.0%
4835076 10.2.1.44 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › CRPV_capsid 0.84 66.0 5.45e-01 82.5% 77.1%
1687950 10.2.1.69 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv_5 0.60 46.0 4.31e-01 91.2% 65.9%
D4 medium residues 676-699_714-734_768-804
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6aj3B00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.61 50.0 4.02e-01 91.5% 71.1%
5yl1A01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.58 49.0 3.79e-01 92.7% 59.7%
1mec100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.57 50.0 3.50e-01 100.0% 42.0%