sub-core-shell_protein

Euk-Vir

Fengkai_orbivirus

sub-core-shell_protein__YP_009163949__Fengkai_orbivirus__1692107

Identity

82.9 mean pLDDT

View cluster (13 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 302-586

PDB

Domain cluster: rep: VP2_protein__YP_009507675__Corriparta_virus__40053__D333-638

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01700.23 best	Orbi_VP3	494.6	6.20e-148	100.0%	32.0%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1409638	4064.1.1.1 ↗	a+b complex topology › Inner layer core protein p3-related › Inner layer core protein p3-related › Inner layer core protein p3-related › Orbi_VP3	0.93	92.0	6.14e-01	100.0%	32.2%
5014303	604.39.1.5 ↗	alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › ECF_trnsprt	0.52	32.0	3.81e-01	86.3%	87.2%
3608327	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.51	28.0	3.40e-01	90.2%	79.3%

D2 high residues 698-863

PDB

Domain cluster: rep: VP3__YP_009507697__Eubenangee_virus__40056__D698-861

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01700.23 best	Orbi_VP3	238.9	1.10e-70	100.0%	18.7%

D3 medium residues 57-77_106-139_596-697

PDB

Domain cluster: rep: inner_core_protein__YP_009158883__Wad_Medani_virus__40067__D62-84_279-316_591-701

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01700.23 best	Orbi_VP3	140.7	5.40e-41	67.5%	11.6%

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3er9B01	1.20.1270.320	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Poxvirus poly(A) polymerase, N domain	0.53	32.0	3.82e-01	94.3%	89.6%
5nx5B00	1.10.600.10	Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase	0.50	39.0	3.27e-01	83.4%	78.4%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1409638	4064.1.1.1 ↗	a+b complex topology › Inner layer core protein p3-related › Inner layer core protein p3-related › Inner layer core protein p3-related › Orbi_VP3	0.92	88.0	5.28e-01	100.0%	72.5%

D4 medium residues 78-105_140-224_866-879

PDB

Domain cluster: rep: VP3__YP_009345881__Orbivirus_SX-2017a__1955493__D82-117_141-226

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01700.23 best	Orbi_VP3	115.5	2.30e-33	73.2%	9.7%

D5 medium residues 225-301_880-899

PDB

Domain cluster: rep: VP3__YP_009507724__Orungo_virus__40058__D231-275_885-906

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01700.23 best	Orbi_VP3	129.6	1.30e-37	80.4%	8.6%