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superoxide_dismutase

Euk-Vir

Anomala_cuprea_entomopoxvirus

superoxide_dismutase__YP_009001565__Anomala_cuprea_entomopoxvirus__62099

Identity

Accession:
YP_009001565 ↗
Protein ID:
superoxide_dismutase
Kingdom:
euk

Quality

97.9 mean pLDDT

Cluster

View cluster (67 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-37_83-113
PDB
Domain cluster: rep: Superoxide_dismutase-like_protein__NP_659703__Sheeppox_virus__10266__D14-47_92-124
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4bd4A00 2.60.40.200 Mainly Beta › Sandwich › Immunoglobulin-like › Superoxide dismutase, copper/zinc binding domain 0.96 91.0 7.53e-01 100.0% 79.8%
1b4tA00 2.60.40.200 Mainly Beta › Sandwich › Immunoglobulin-like › Superoxide dismutase, copper/zinc binding domain 0.95 90.0 6.66e-01 100.0% 77.1%
1y8cA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.77 55.0 5.83e-01 79.4% 85.0%
6g47A00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.74 56.0 4.17e-01 80.9% 98.8%
3bxoA02 2.20.130.10 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains 0.73 54.0 5.78e-01 77.9% 93.2%
2fpnA01 3.30.2030.10 Alpha Beta › 2-Layer Sandwich › TBP-like › YwmB-like 0.73 53.0 4.11e-01 77.9% 37.1%
3d2lA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.69 52.0 5.41e-01 79.4% 85.7%
1pzdA01 2.60.40.1480 Mainly Beta › Sandwich › Immunoglobulin-like › Coatomer, gamma subunit, appendage domain 0.65 56.0 4.40e-01 100.0% 78.8%
4xmeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.64 56.0 4.15e-01 100.0% 64.1%
4ftxB01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.64 49.0 4.00e-01 100.0% 44.5%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 40.0 3.96e-01 75.0% 60.6%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 44.0 4.15e-01 83.8% 61.7%
1f2uA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 46.0 3.58e-01 79.4% 70.5%
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.61 45.0 4.22e-01 80.9% 63.1%
4ggtB00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.61 53.0 4.64e-01 100.0% 93.4%
5w8mA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.61 45.0 3.26e-01 79.4% 98.0%
1lkeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 53.0 4.10e-01 100.0% 66.9%
3g16B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 50.0 3.90e-01 92.6% 72.4%
5kkuD00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.61 48.0 3.18e-01 86.8% 38.4%
5fgoA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 42.0 4.36e-01 89.7% 80.6%
1k38A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.60 53.0 3.64e-01 100.0% 76.2%
5ctnA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.59 54.0 3.67e-01 100.0% 76.8%
2rkcA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.59 51.0 3.19e-01 98.5% 31.8%
3k0zA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 47.0 3.75e-01 91.2% 70.5%
4oocA00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.58 46.0 3.08e-01 86.8% 39.2%
2wuqB00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.58 51.0 3.41e-01 100.0% 66.4%
2fggA01 3.30.160.240 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738 0.58 40.0 3.89e-01 72.1% 78.7%
3zxkA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 50.0 3.56e-01 100.0% 62.5%
3fkaB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 47.0 3.96e-01 92.6% 90.0%
2pwwA00 3.30.310.100 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › YugN-like 0.56 44.0 3.72e-01 85.3% 51.3%
4ewfA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.56 50.0 3.35e-01 100.0% 64.9%
3en8A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 46.0 3.93e-01 91.2% 88.4%
4ao8A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 40.0 2.91e-01 80.9% 35.5%
4bg7A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.56 37.0 3.32e-01 83.8% 46.9%
1ylxA00 3.30.70.1480 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like 0.55 40.0 3.55e-01 76.5% 54.5%
2w38A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.55 48.0 3.14e-01 98.5% 28.6%
4l9cA00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.55 50.0 3.83e-01 100.0% 54.7%
1x7dB01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.55 49.0 3.66e-01 100.0% 44.4%
2bs6A01 2.40.128.190 Mainly Beta › Beta Barrel › Lipocalin › 0.54 48.0 4.50e-01 100.0% 89.3%
4orlA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 43.0 3.79e-01 91.2% 90.0%
2z6oA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.54 45.0 3.55e-01 100.0% 74.1%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.54 47.0 3.67e-01 100.0% 72.7%
1omoA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.53 48.0 3.70e-01 100.0% 51.0%
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 44.0 4.29e-01 98.5% 85.5%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.50 44.0 3.51e-01 98.5% 92.9%
3tfzB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.50 42.0 3.31e-01 100.0% 75.8%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3798880 11.1.3.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Cu,Zn superoxide dismutase-like 0.99 96.0 6.96e-01 100.0% 73.4%
3492090 11.1.3.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Cu,Zn superoxide dismutase-like › Sod_Cu 0.89 84.0 6.30e-01 100.0% 76.7%
3589291 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.78 58.0 5.03e-01 79.4% 100.0%
5043752 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.76 55.0 3.72e-01 100.0% 21.2%
2391407 12.3.1.35 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › GalA_N 0.75 55.0 3.94e-01 76.5% 78.6%
3290942 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.72 65.0 5.60e-01 100.0% 85.7%
3990496 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.69 47.0 4.66e-01 77.9% 68.6%
9393 2003.1.5.151 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23, Methyltransf_25 0.67 56.0 3.75e-01 89.7% 34.1%
3213707 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.67 58.0 5.04e-01 100.0% 78.2%
3721056 11.1.1.44 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Alpha_adaptinC2 0.66 57.0 4.76e-01 100.0% 91.2%
4954483 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.66 52.0 4.33e-01 100.0% 48.0%
5019252 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.65 45.0 2.66e-01 72.1% 9.7%
5052182 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 57.0 4.17e-01 100.0% 88.2%
3992567 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 48.0 3.92e-01 79.4% 56.8%
3695698 3692.1.1.0 ↗ a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain 0.64 49.0 3.83e-01 100.0% 39.3%
3795920 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.64 55.0 4.91e-01 100.0% 83.0%
4003669 5.1.4.37 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.64 53.0 3.17e-01 100.0% 12.9%
3812869 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.63 54.0 4.77e-01 94.1% 84.0%
3290484 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.63 52.0 3.85e-01 100.0% 35.4%
3312366 11.1.1.635 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_N_CWD1 0.63 54.0 4.29e-01 98.5% 83.4%
4248012 222.1.1.0 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.63 47.0 3.67e-01 79.4% 81.4%
4980165 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.62 46.0 2.79e-01 77.9% 23.9%
4944680 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 52.0 2.98e-01 94.1% 98.0%
4345467 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.60 44.0 2.63e-01 76.5% 23.5%
3701349 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 49.0 3.00e-01 100.0% 14.3%
4124708 3692.1.1.1 ↗ a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall 0.59 43.0 3.35e-01 79.4% 35.4%
5064859 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.59 48.0 3.30e-01 89.7% 36.3%
3214412 11.10.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.59 49.0 4.13e-01 100.0% 80.8%
3168944 5.1.4.97 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Rrn6_beta-prop 0.59 52.0 3.22e-01 100.0% 25.0%
3217795 11.10.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.59 49.0 4.17e-01 100.0% 83.2%
3364063 295.1.1.3 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.59 46.0 3.65e-01 85.3% 94.3%
4025950 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.58 49.0 3.54e-01 97.1% 70.0%
5009289 3692.1.1.1 ↗ a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall 0.58 48.0 3.91e-01 100.0% 48.4%
3214409 11.10.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.58 47.0 4.03e-01 100.0% 82.3%
5052916 243.1.1.22 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Lumazine_bd_2 0.58 47.0 3.86e-01 91.2% 84.6%
358014 243.1.1.22 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Lumazine_bd_2 0.57 47.0 3.96e-01 92.6% 90.0%
3213538 11.10.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.57 47.0 4.00e-01 100.0% 83.1%
4010371 295.1.1.45 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PF30238 0.57 50.0 4.55e-01 100.0% 96.8%
3340221 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 50.0 3.13e-01 100.0% 19.0%
3960733 330.8.1.1 ↗ a+b two layers › dsRBD-like › Rv2632c-like › Rv2632c-like › Rv2632c-like 0.57 42.0 3.97e-01 86.8% 63.5%
4951151 5.1.4.40 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.56 48.0 3.11e-01 98.5% 28.8%
5038973 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 48.0 3.08e-01 100.0% 19.8%
3802525 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.56 50.0 3.21e-01 100.0% 24.5%
3483808 295.1.1.3 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.55 43.0 4.29e-01 97.1% 81.4%
3929256 295.1.1.3 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.55 44.0 3.57e-01 89.7% 97.9%
3205088 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.55 40.0 3.33e-01 77.9% 45.0%
2336349 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.55 48.0 4.43e-01 100.0% 84.3%
3595303 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 47.0 2.85e-01 100.0% 23.1%
3241305 295.1.1.3 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.54 45.0 3.60e-01 92.6% 99.3%
2605238 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.53 43.0 3.77e-01 92.6% 92.5%
2394565 9.30.1.1 ↗ beta barrels › Lipocalins/Streptavidin › PknI kinase extracellular sensor domain › PknI kinase extracellular sensor domain › PF31220 0.53 43.0 3.39e-01 94.1% 50.3%
3714612 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.53 41.0 3.22e-01 98.5% 37.0%
5045339 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 44.0 2.90e-01 100.0% 33.1%
3649973 5.1.4.21 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Pep3_Vps18 0.52 46.0 2.87e-01 100.0% 22.9%
6395 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.52 42.0 3.43e-01 89.7% 49.6%
3890928 295.1.1.3 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.51 45.0 3.33e-01 98.5% 87.2%
3934016 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.50 42.0 2.71e-01 100.0% 33.4%
D2 medium residues 38-82_114-139
PDB
Domain cluster: rep: hypothetical_protein_FR483_N091R__YP_001425723__Paramecium_bursaria_Chlorella_virus_FR483__399781__D54-91_130-156
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00080.26 best Sod_Cu 56.0 8.00e-15 64.8% 34.6%