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sw_7_scaffold_1_prodigal-single.1__X__X__00017

Bact-Vir

sw_7_scaffold_1_prodigal-single.1__X__X__00017

Identity

Kingdom:
phage

Quality

65.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 72-167
PDB
Domain cluster: rep: OP484857.1__UYE95809.1__HAAEEKHM_00089__00089__D9-89
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF11523.14 best DUF3223 78.9 4.80e-22 79.2% 89.3%
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2k0mA00 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.89 81.0 7.86e-01 95.8% 88.5%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 40.0 4.17e-01 82.3% 70.3%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 31.0 3.51e-01 72.9% 70.8%
5kiqA02 3.10.20.890 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.56 36.0 3.97e-01 84.4% 86.1%
2re3A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.55 35.0 3.90e-01 95.8% 87.1%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 32.0 3.76e-01 78.1% 88.7%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.54 41.0 4.40e-01 91.7% 95.0%
1t0hA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 37.0 3.79e-01 74.0% 76.0%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.53 32.0 3.78e-01 71.9% 92.1%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 35.0 4.00e-01 91.7% 95.7%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 33.0 3.81e-01 70.8% 93.9%
2gu3A02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 31.0 3.60e-01 80.2% 90.5%
1eigA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 30.0 3.39e-01 71.9% 76.7%
4p5nA00 2.30.30.1060 Mainly Beta › Roll › SH3 type barrels. › 0.51 35.0 3.90e-01 89.6% 94.6%
2y1sA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.50 40.0 3.93e-01 87.5% 98.1%
3qokA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.50 30.0 3.08e-01 88.5% 58.8%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3659428 3556.1.1.1 ↗ a+b two layers › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › DUF3223 0.93 86.0 8.63e-01 97.9% 99.0%
3702975 3556.1.1.0 ↗ a+b two layers › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 0.92 70.0 7.15e-01 79.2% 100.0%
3659060 3556.1.1.1 ↗ a+b two layers › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › DUF3223 0.91 81.0 7.39e-01 92.7% 77.5%
4295522 3556.1.1.1 ↗ a+b two layers › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › DUF3223 0.91 80.0 7.78e-01 92.7% 90.5%
3327525 3556.1.1.1 ↗ a+b two layers › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › DUF3223 0.89 79.0 6.91e-01 92.7% 70.4%
184706 3556.1.1.1 ↗ a+b two layers › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › DUF3223 0.89 81.0 7.86e-01 95.8% 88.5%
3434770 3556.1.1.1 ↗ a+b two layers › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › DUF3223 0.88 84.0 8.10e-01 100.0% 91.4%
3346946 3556.1.1.1 ↗ a+b two layers › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › DUF3223 0.87 82.0 7.70e-01 99.0% 86.7%
2674741 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.61 36.0 4.35e-01 90.6% 100.0%
4044269 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.60 38.0 4.25e-01 82.3% 85.7%
4339993 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.58 37.0 3.86e-01 96.9% 68.9%
5036655 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 30.0 3.68e-01 71.9% 80.0%
3605879 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.57 27.0 3.69e-01 70.8% 91.1%
598 4.1.1.68 ↗ beta barrels › SH3 › SH3 › SH3 › YorP 0.57 37.0 4.17e-01 86.5% 91.5%
3393297 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.55 34.0 3.61e-01 91.7% 71.2%
4027502 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 35.0 3.99e-01 84.4% 95.4%
3264879 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 33.0 3.71e-01 86.5% 85.7%
3715091 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.52 26.0 2.99e-01 75.0% 63.1%
3587060 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.51 35.0 3.86e-01 72.9% 89.3%
5053225 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 42.0 4.15e-01 94.8% 89.0%
4991900 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.50 44.0 3.00e-01 100.0% 49.9%
D2 high residues 169-287
PDB