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sw_7_scaffold_1_prodigal-single.1__X__X__00020

Bact-Vir

sw_7_scaffold_1_prodigal-single.1__X__X__00020

Identity

Kingdom:
phage

Quality

77.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-64
PDB
D2 high residues 90-237
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4jixB00 3.30.2010.10 Alpha Beta › 2-Layer Sandwich › Zincin-like › "Metalloproteases (""zincins""), catalytic domain" 0.73 46.0 5.43e-01 71.6% 89.4%
2om6A02 1.10.150.400 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.64 34.0 4.50e-01 89.2% 97.5%
1zp2A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.62 40.0 4.55e-01 98.0% 86.6%
2ld7B00 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.58 29.0 3.78e-01 89.2% 90.7%
2w9zA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.57 42.0 4.45e-01 98.0% 85.7%
5fgzA02 1.10.3810.10 Mainly Alpha › Orthogonal Bundle › Penicillin binding protein transpeptidase fold › Biosynthetic peptidoglycan transglycosylase-like 0.55 39.0 3.79e-01 70.9% 90.8%
1jfaB00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.55 43.0 3.32e-01 83.1% 64.3%
2vk9A03 1.10.3730.30 Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › 0.54 34.0 4.03e-01 87.2% 93.9%
5mmjo00 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.50 20.0 2.73e-01 85.8% 68.0%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3949528 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.83 70.0 6.93e-01 87.8% 100.0%
5055672 2498.1.1.39 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like 0.76 50.0 5.97e-01 70.3% 95.2%
1030677 2498.1.1.17 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.72 46.0 5.30e-01 74.3% 85.7%
3519421 2498.1.1.62 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M76 0.70 54.0 5.17e-01 80.4% 99.4%
5053045 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.69 55.0 4.69e-01 83.1% 86.5%
4972072 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.68 50.0 4.88e-01 75.0% 90.6%
5028916 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.65 51.0 4.63e-01 81.1% 92.8%
4928737 592.2.1.0 ↗ alpha arrays › PWI domain-like › YugE-like › YugE-like 0.61 33.0 4.01e-01 86.5% 81.1%
3589965 2498.1.1.29 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M78 0.59 44.0 4.64e-01 79.7% 97.0%
5014005 614.1.1.0 ↗ alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain 0.57 30.0 3.95e-01 85.8% 95.0%
3942167 101.1.2.244 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.54 22.0 3.21e-01 84.5% 86.7%
D3 high residues 240-245_247-305
PDB
Domain cluster: representative
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2x4hA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 54.0 4.26e-01 72.3% 51.2%
2l2oA00 1.10.10.1540 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Costar domain 0.75 51.0 4.68e-01 70.8% 92.9%
1y0uA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 55.0 4.92e-01 78.5% 76.4%
2qenA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 50.0 4.95e-01 70.8% 95.7%
2ia2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 50.0 5.01e-01 70.8% 89.7%
1in4A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 51.0 4.94e-01 73.8% 91.8%
3pfiA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 50.0 4.85e-01 73.8% 90.4%
2fnaA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 48.0 4.64e-01 70.8% 93.2%
1bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 62.0 5.45e-01 100.0% 81.1%
5hvqC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 54.0 4.72e-01 87.7% 86.7%
3dp7B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 48.0 4.32e-01 75.4% 73.1%
1cf7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 45.0 4.23e-01 70.8% 95.1%
4ev0A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 46.0 4.38e-01 70.8% 92.2%
7cluA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 47.0 4.30e-01 75.4% 74.2%
2cw7A02 1.10.10.1010 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Intein homing endonuclease, domain IV 0.64 44.0 3.47e-01 70.8% 35.6%
3lstA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 45.0 4.18e-01 75.4% 75.6%
1xdsB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 44.0 4.01e-01 73.8% 64.1%
1gkuB06 1.10.460.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 0.63 55.0 4.16e-01 98.5% 57.7%
3ecoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 55.0 4.41e-01 98.5% 57.4%
1lnwF01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 55.0 4.47e-01 100.0% 61.3%
3to7A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 42.0 4.02e-01 72.3% 77.8%
2chnB03 1.20.58.460 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hyaluronidase post-catalytic domain-like 0.62 43.0 3.23e-01 75.4% 80.0%
3u7iA00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.62 44.0 3.00e-01 75.4% 33.9%
2pexA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 54.0 4.29e-01 100.0% 55.1%
1i7dA02 1.10.460.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 0.61 53.0 3.89e-01 98.5% 63.3%
2fmyA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 42.0 3.93e-01 70.8% 96.3%
1r7jA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 49.0 4.43e-01 96.9% 67.8%
2xkoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 47.0 4.22e-01 90.8% 88.3%
4omfG02 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 39.0 3.81e-01 93.8% 65.3%
2pjpA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 45.0 4.64e-01 95.4% 98.4%
7pzaA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 47.0 4.37e-01 100.0% 95.3%
3b02A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 47.0 4.35e-01 100.0% 89.4%
3dv8A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 46.0 4.34e-01 100.0% 93.6%
2bgcA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 44.0 3.88e-01 100.0% 79.2%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4951644 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.79 54.0 4.70e-01 70.8% 64.2%
4982256 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.78 53.0 4.60e-01 70.8% 62.0%
5039517 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.78 53.0 5.23e-01 70.8% 95.7%
3329724 101.1.2.60 ↗ alpha arrays › HTH › HTH › winged helix domain › HA2_N 0.77 53.0 5.17e-01 70.8% 87.1%
4352407 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.77 55.0 5.40e-01 75.4% 84.3%
3830975 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.77 52.0 5.14e-01 70.8% 87.1%
5065637 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.76 57.0 5.06e-01 80.0% 86.0%
5008624 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.76 51.0 4.94e-01 70.8% 70.7%
3398923 101.1.2.248 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF4777 0.75 51.0 4.80e-01 70.8% 87.5%
5015794 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 51.0 4.81e-01 70.8% 82.5%
4997796 2006.1.6.45 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › PF30231 0.75 52.0 3.34e-01 72.3% 25.6%
5060150 101.1.2.222 ↗ alpha arrays › HTH › HTH › winged helix domain › PH0730-like_N 0.75 51.0 4.66e-01 70.8% 72.9%
4947420 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 51.0 4.31e-01 70.8% 64.8%
5013696 101.1.2.950 ↗ alpha arrays › HTH › HTH › winged helix domain › PF29171 0.73 58.0 5.46e-01 86.2% 91.3%
3808197 101.1.2.396 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.73 51.0 4.01e-01 73.8% 46.4%
4949222 225.2.1.1 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › Uncharacterized protein DIP2311 middle domain › Uncharacterized protein DIP2311 middle domain › HATPase_c_4 0.72 58.0 3.79e-01 89.2% 41.0%
3281345 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 53.0 5.02e-01 80.0% 92.5%
5016934 101.1.2.385 ↗ alpha arrays › HTH › HTH › winged helix domain › HRQ1_WHD 0.72 49.0 4.82e-01 70.8% 85.7%
5048340 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 49.0 4.47e-01 70.8% 81.2%
3825507 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 56.0 3.28e-01 84.6% 13.7%
5005181 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 53.0 3.86e-01 78.5% 42.9%
3691906 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 49.0 4.28e-01 72.3% 97.0%
3884426 101.1.2.375 ↗ alpha arrays › HTH › HTH › winged helix domain › MOV-10_N 0.71 49.0 4.63e-01 72.3% 88.7%
5083286 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 49.0 3.35e-01 70.8% 32.2%
4260815 101.1.2.375 ↗ alpha arrays › HTH › HTH › winged helix domain › MOV-10_N 0.71 49.0 4.60e-01 72.3% 88.7%
5055888 101.1.2.222 ↗ alpha arrays › HTH › HTH › winged helix domain › PH0730-like_N 0.71 48.0 4.64e-01 70.8% 85.3%
4990239 101.1.2.210 ↗ alpha arrays › HTH › HTH › winged helix domain › CggR_N 0.71 50.0 4.78e-01 73.8% 85.3%
5062795 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 49.0 4.26e-01 73.8% 57.1%
4930335 101.1.2.385 ↗ alpha arrays › HTH › HTH › winged helix domain › HRQ1_WHD 0.71 48.0 4.86e-01 70.8% 80.0%
4927990 4156.1.1.6 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Helicase_dom4_arc 0.70 48.0 3.15e-01 70.8% 18.6%
3304578 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 53.0 3.11e-01 81.5% 16.0%
5034425 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 55.0 5.11e-01 89.2% 92.9%
5000261 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 50.0 5.22e-01 78.5% 100.0%
4933710 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.69 47.0 2.85e-01 70.8% 25.1%
4262488 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 46.0 3.71e-01 70.8% 51.5%
3944078 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 46.0 4.56e-01 70.8% 90.0%
3616301 101.1.15.0 ↗ alpha arrays › HTH › HTH › HAT1, C-terminal domain 0.68 45.0 4.89e-01 72.3% 81.8%
4268455 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 48.0 4.41e-01 75.4% 81.2%
4655480 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 47.0 4.52e-01 75.4% 90.7%
4940567 101.1.2.18 ↗ alpha arrays › HTH › HTH › winged helix domain › Ribosomal_S19e 0.66 56.0 4.43e-01 96.9% 87.8%
3955641 101.1.2.734 ↗ alpha arrays › HTH › HTH › winged helix domain › AbiEi_2 0.66 46.0 4.29e-01 75.4% 81.2%
4284978 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 51.0 5.11e-01 98.5% 89.2%
3718747 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 41.0 4.08e-01 70.8% 94.3%
3265825 101.1.2.65 ↗ alpha arrays › HTH › HTH › winged helix domain › Rad21_Rec8 0.60 42.0 3.84e-01 73.8% 91.1%
3221366 101.1.2.281 ↗ alpha arrays › HTH › HTH › winged helix domain › Tfb2 0.60 44.0 4.57e-01 95.4% 85.0%
5042212 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 51.0 3.95e-01 93.8% 65.7%
4315754 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 51.0 4.49e-01 100.0% 64.2%
4947731 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 43.0 3.88e-01 78.5% 71.6%
5035979 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 52.0 4.26e-01 100.0% 61.7%
4029719 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 50.0 4.43e-01 96.9% 92.6%
4181610 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 48.0 4.11e-01 100.0% 66.1%
4037084 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 49.0 4.17e-01 98.5% 92.4%
4024039 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 47.0 4.04e-01 96.9% 87.6%
4969883 225.2.1.0 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › Uncharacterized protein DIP2311 middle domain › Uncharacterized protein DIP2311 middle domain 0.54 44.0 3.11e-01 96.9% 58.0%
3591982 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 42.0 4.10e-01 90.8% 92.0%
4938467 205.1.1.33 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_10 0.52 40.0 3.98e-01 98.5% 81.4%
4970460 225.2.1.1 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › Uncharacterized protein DIP2311 middle domain › Uncharacterized protein DIP2311 middle domain › HATPase_c_4 0.51 41.0 2.92e-01 98.5% 54.5%