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sw_7_scaffold_1_prodigal-single.1__X__X__00086

Bact-Vir

sw_7_scaffold_1_prodigal-single.1__X__X__00086

Identity

Kingdom:
phage

Quality

58.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 23-85
PDB
Domain cluster: representative
CATH (58)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6xssA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.71 49.0 4.77e-01 98.4% 65.2%
4gywA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.71 48.0 3.99e-01 98.4% 40.5%
7qihA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.70 49.0 4.20e-01 100.0% 46.5%
3qdnA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.68 48.0 4.38e-01 100.0% 56.0%
3hymL00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.67 53.0 3.48e-01 95.2% 19.1%
2nutB01 1.20.120.730 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Sec23/Sec24 helical domain 0.66 50.0 3.87e-01 85.7% 47.7%
2xpiD00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.65 52.0 3.03e-01 92.1% 10.4%
2xevB00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.61 51.0 4.21e-01 96.8% 61.3%
5tqbB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.61 52.0 3.34e-01 96.8% 32.5%
2l6jA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.61 51.0 4.25e-01 93.7% 59.5%
2cfuA02 1.25.40.880 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Alkyl sulfatase, dimerisation domain 0.61 48.0 3.72e-01 100.0% 38.3%
6u3wB00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.61 51.0 3.36e-01 96.8% 29.2%
7tj4A01 1.25.40.1040 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.61 53.0 4.30e-01 96.8% 64.2%
3u5ei01 1.10.10.1760 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L36 0.61 42.0 4.22e-01 81.0% 70.1%
6hftA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.61 52.0 4.18e-01 96.8% 60.6%
3k9iA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.60 54.0 4.58e-01 100.0% 61.2%
2oduA02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 46.0 3.89e-01 84.1% 81.0%
7nazA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.59 50.0 3.36e-01 96.8% 28.0%
4ui9J00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.59 52.0 3.06e-01 96.8% 15.1%
1elwA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.59 51.0 4.17e-01 96.8% 65.0%
2kckA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.59 48.0 4.05e-01 93.7% 52.7%
1elrA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.59 48.0 3.97e-01 96.8% 62.5%
3ma5A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.59 51.0 4.55e-01 96.8% 91.1%
1iygA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.59 51.0 3.95e-01 95.2% 60.9%
3gz1A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.59 47.0 3.77e-01 95.2% 42.4%
1tjcA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.59 51.0 4.44e-01 96.8% 87.4%
5fzsA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.58 51.0 4.26e-01 96.8% 71.0%
1w3bB00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.58 51.0 3.14e-01 96.8% 19.8%
4malA00 1.20.58.2200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 43.0 4.44e-01 85.7% 88.1%
1hh8A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.58 51.0 3.60e-01 96.8% 38.5%
2ff4A02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.58 49.0 3.63e-01 100.0% 36.3%
3vtxB00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.58 51.0 3.61e-01 96.8% 41.5%
6wb9201 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.58 48.0 3.15e-01 95.2% 22.1%
2d2sA01 1.20.58.1210 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Exo84p, N-terminal helical domain 0.57 43.0 3.65e-01 84.1% 49.1%
2kc7A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.57 50.0 4.29e-01 96.8% 76.8%
2vyiA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.57 50.0 3.94e-01 96.8% 60.2%
5jj6B01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.57 50.0 4.34e-01 96.8% 83.3%
1a17A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.56 48.0 3.63e-01 96.8% 47.8%
2fo7A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.56 49.0 3.83e-01 96.8% 55.9%
4j8dD00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.56 50.0 3.66e-01 96.8% 46.3%
2hr2A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.56 46.0 3.55e-01 93.7% 44.2%
4rg9B01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.56 49.0 3.63e-01 100.0% 48.5%
4aifA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.56 47.0 3.67e-01 95.2% 52.1%
2dbaA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.56 48.0 3.95e-01 96.8% 64.4%
2lahA00 1.25.40.430 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.56 45.0 3.53e-01 98.4% 37.5%
2q7fA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.56 50.0 3.53e-01 100.0% 41.2%
2xmxA01 1.20.1440.280 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.56 48.0 3.77e-01 100.0% 82.1%
7yb9A01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 49.0 3.41e-01 100.0% 29.4%
3sz7A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 48.0 3.67e-01 100.0% 54.3%
6srbA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.55 42.0 3.54e-01 84.1% 67.0%
1kt1A03 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 47.0 3.53e-01 96.8% 48.7%
1hxiA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 49.0 4.04e-01 100.0% 79.5%
4u04B01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 46.0 4.18e-01 96.8% 88.6%
3fflA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 47.0 3.81e-01 100.0% 50.8%
3ctvA00 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.54 47.0 4.22e-01 100.0% 81.5%
2vgxB00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 48.0 3.69e-01 100.0% 57.9%
7zmgL01 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 38.0 3.52e-01 74.6% 80.0%
2r5sA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 45.0 4.18e-01 96.8% 86.7%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2875706 109.4.1.1613 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2, ANAPC3, TPR_8 0.79 52.0 4.43e-01 100.0% 43.4%
3697044 109.4.1.186 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ANAPC3 0.79 52.0 3.38e-01 100.0% 16.5%
5000143 7602.1.1.1 ↗ a/b three-layered sandwiches › Lactate racemase C-terminal domain › Lactate racemase C-terminal domain › Lactate racemase C-terminal domain › LarA_C 0.74 49.0 3.49e-01 71.4% 23.3%
3590183 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.74 48.0 3.89e-01 100.0% 35.8%
3876892 375.2.1.0 ↗ few secondary structure elements › Rubredoxin-like › YfgJ-like › YfgJ-like 0.73 49.0 4.54e-01 98.4% 55.0%
3873620 109.4.1.1645 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_8, TPR_17, TPR_16 0.73 50.0 3.16e-01 100.0% 14.8%
3163647 109.4.1.210 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_19 0.68 56.0 4.39e-01 95.2% 42.1%
3646123 109.4.1.3043 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ANAPC3, TPR_7, TPR_8, TPR_16 0.66 53.0 3.10e-01 88.9% 15.0%
3561772 206.1.3.12 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › TTL 0.65 57.0 3.47e-01 96.8% 51.5%
3715379 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 53.0 3.42e-01 95.2% 19.3%
3654538 109.4.1.631 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SRP72 0.65 56.0 3.60e-01 98.4% 20.0%
3717332 109.4.1.888 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT_Syf1_CNRKL1_N 0.62 56.0 3.37e-01 100.0% 14.3%
3645659 109.4.1.1334 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3, PPR_long 0.62 53.0 3.12e-01 100.0% 86.6%
3929748 109.4.1.1303 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT_PRP39_N, HAT_PRP39_C 0.62 54.0 3.35e-01 100.0% 16.1%
3605857 109.4.1.449 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2,TPR_8 0.61 49.0 3.15e-01 95.2% 17.8%
3412610 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 52.0 3.33e-01 100.0% 19.0%
3288851 109.4.1.511 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF6596 0.61 49.0 3.35e-01 95.2% 23.7%
2553233 109.4.1.68 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Coatomer_E 0.61 51.0 3.36e-01 96.8% 29.2%
2889940 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 53.0 4.28e-01 96.8% 63.1%
3377615 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 50.0 3.82e-01 95.2% 38.1%
3492774 109.4.1.95 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2 0.61 50.0 3.71e-01 95.2% 34.9%
3649395 109.4.1.1280 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_long 0.61 50.0 3.78e-01 95.2% 37.2%
3403606 109.4.1.2420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28853, PF28855 0.60 51.0 3.18e-01 100.0% 15.7%
3834324 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 53.0 3.26e-01 100.0% 18.0%
4025173 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 53.0 3.49e-01 96.8% 29.8%
3380395 109.4.1.2972 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3, PPR_long, TPR_24, PF29070 0.60 49.0 2.80e-01 95.2% 12.3%
3323491 109.4.1.1979 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SRP72, SRP_TPR_like 0.60 51.0 3.00e-01 100.0% 11.0%
3228511 601.1.2.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) 0.59 49.0 3.72e-01 92.1% 88.0%
3403744 109.4.1.3429 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28853, PF28855, PF28893 0.59 50.0 2.99e-01 100.0% 18.3%
3376578 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 51.0 4.34e-01 100.0% 83.8%
3502787 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 51.0 4.02e-01 100.0% 48.0%
3480475 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 48.0 3.40e-01 96.8% 34.3%
1138065 109.4.1.5 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1 0.57 50.0 4.42e-01 96.8% 83.5%
3711150 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 49.0 4.00e-01 96.8% 63.3%
3876977 109.4.1.192 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 0.57 50.0 2.86e-01 96.8% 12.8%
3583659 109.4.1.1735 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_8, TPR_12, TPR_16 0.56 50.0 3.83e-01 98.4% 58.6%
3202222 109.4.1.1437 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ANAPC3, TPR_8 0.56 47.0 3.29e-01 100.0% 55.4%
3840071 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 51.0 3.21e-01 100.0% 29.5%
2722840 109.4.1.2410 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_8, TPR_17, TPR_19 0.55 47.0 3.80e-01 96.8% 61.1%
None — 0.55 49.0 3.71e-01 100.0% 52.0%
3483795 109.4.1.2382 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF29407 0.55 44.0 3.34e-01 95.2% 34.4%
3398758 611.3.1.0 ↗ alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.54 45.0 3.42e-01 100.0% 80.6%
3963104 4973.1.1.1 ↗ alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › DnaB_bind 0.53 43.0 4.02e-01 100.0% 71.1%
3493629 109.4.1.1200 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_WDR35 0.53 43.0 3.50e-01 100.0% 45.6%
D2 medium residues 131-193
PDB