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sw_7_scaffold_1_prodigal-single.1__X__X__00134
Bact-Virsw_7_scaffold_1_prodigal-single.1__X__X__00134
Identity
- Kingdom:
- phage
Quality
75.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-77
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3hjhA02 | 3.30.2060.10 | Alpha Beta › 2-Layer Sandwich › Penicillin-binding protein 1b fold › Penicillin-binding protein 1b domain | 0.74 | 51.0 | 4.66e-01 | 93.8% | 54.7% |
| 3wknF00 | 6.20.50.120 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.65 | 42.0 | 4.68e-01 | 80.0% | 93.5% |
| 2zdjA00 | 3.10.450.450 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.63 | 43.0 | 4.28e-01 | 70.8% | 83.8% |
| 3iwgA01 | 3.40.630.80 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › | 0.61 | 43.0 | 3.43e-01 | 73.8% | 51.5% |
| 4e4tA03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.60 | 47.0 | 3.37e-01 | 86.2% | 31.2% |
| 2iv2X01 | 2.20.25.90 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains | 0.59 | 44.0 | 4.64e-01 | 86.2% | 94.5% |
| 3df7A02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.59 | 48.0 | 3.80e-01 | 90.8% | 43.8% |
| 1m4iB00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.57 | 40.0 | 2.96e-01 | 73.8% | 46.0% |
| 2kzxA00 | 3.90.1010.20 | Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › | 0.57 | 50.0 | 4.03e-01 | 100.0% | 90.1% |
| 2d4aA02 | 3.90.110.10 | Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | 0.57 | 48.0 | 3.73e-01 | 100.0% | 52.5% |
| 8a9nA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.57 | 39.0 | 3.16e-01 | 73.8% | 64.1% |
| 2arhA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.56 | 41.0 | 3.10e-01 | 76.9% | 78.5% |
| 7vqxR01 | 4.10.1240.10 | Few Secondary Structures › Irregular › Hormone receptor fold › GPCR, family 2, extracellular hormone receptor domain | 0.56 | 32.0 | 3.01e-01 | 76.9% | 44.0% |
| 2atrA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.56 | 38.0 | 3.11e-01 | 72.3% | 50.4% |
| 2l5qA01 | 2.30.30.730 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 38.0 | 4.07e-01 | 95.4% | 96.0% |
| 6r8gB02 | 3.90.110.10 | Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | 0.55 | 46.0 | 3.52e-01 | 100.0% | 49.4% |
| 4g59B00 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.55 | 45.0 | 3.54e-01 | 100.0% | 85.9% |
| 3hxlA02 | 2.60.40.4290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 42.0 | 3.76e-01 | 96.9% | 60.0% |
| 3bk5A00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.54 | 46.0 | 3.24e-01 | 100.0% | 74.5% |
| 2h3gX01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.54 | 38.0 | 3.44e-01 | 73.8% | 98.9% |
| 1ji8A01 | 3.30.1420.10 | Alpha Beta › 2-Layer Sandwich › Dissimilatory Siroheme-sulfite Reductase; Chain: A; domain 1 › DsrC protein, N-terminal domain | 0.54 | 34.0 | 3.84e-01 | 86.2% | 89.4% |
| 3l9rA01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.54 | 44.0 | 3.38e-01 | 96.9% | 97.1% |
| 1lqvB00 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.53 | 44.0 | 3.41e-01 | 100.0% | 98.8% |
| 1kcgC00 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.53 | 42.0 | 3.36e-01 | 100.0% | 94.1% |
| 8p2aA01 | 3.90.1010.20 | Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › | 0.52 | 45.0 | 4.15e-01 | 100.0% | 98.9% |
| 3it8D01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.51 | 40.0 | 3.08e-01 | 92.3% | 87.2% |
| 3riqA00 | 2.160.20.20 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.51 | 34.0 | 2.04e-01 | 70.8% | 8.7% |
| 1ti2A01 | 2.20.25.340 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.51 | 30.0 | 3.08e-01 | 78.5% | 56.1% |
| 6dxwA01 | 3.60.60.10 | Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A | 0.50 | 43.0 | 3.05e-01 | 100.0% | 65.1% |
| 3mgdB00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.50 | 35.0 | 2.73e-01 | 73.8% | 59.9% |
| 2w7qB00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.50 | 40.0 | 3.13e-01 | 100.0% | 67.8% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4524863 | 506.2.1.2 ↗ | beta meanders › Colicin E3 ribonuclease domain-like › UvrB interaction domain › UvrB interaction domain › UvrB_inter | 0.72 | 51.0 | 4.53e-01 | 95.4% | 51.6% |
| 1003271 | 3665.1.1.1 ↗ | beta barrels › hypothetical protein TTMA177 › hypothetical protein TTMA177 › hypothetical protein TTMA177 › DUF6839 | 0.63 | 43.0 | 4.26e-01 | 70.8% | 82.6% |
| 5037336 | 3665.1.1.1 ↗ | beta barrels › hypothetical protein TTMA177 › hypothetical protein TTMA177 › hypothetical protein TTMA177 › DUF6839 | 0.62 | 43.0 | 4.09e-01 | 73.8% | 77.5% |
| 3964191 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.62 | 40.0 | 3.33e-01 | 73.8% | 37.4% |
| 3982692 | 1001.1.1.4 ↗ | a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Molybdopterin_N | 0.62 | 41.0 | 4.28e-01 | 86.2% | 75.0% |
| 3387550 | 1001.1.1.4 ↗ | a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Molybdopterin_N | 0.61 | 42.0 | 4.62e-01 | 86.2% | 92.0% |
| 3999240 | 5.1.5.45 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PROPPIN | 0.61 | 39.0 | 2.73e-01 | 78.5% | 19.1% |
| 3597025 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.60 | 51.0 | 4.42e-01 | 100.0% | 60.0% |
| 3435374 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.60 | 40.0 | 3.68e-01 | 70.8% | 52.9% |
| 3917386 | 233.1.1.1 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I | 0.59 | 49.0 | 3.73e-01 | 100.0% | 97.1% |
| 3600727 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.59 | 48.0 | 3.06e-01 | 92.3% | 47.6% |
| 3953046 | 1001.1.1.4 ↗ | a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Molybdopterin_N | 0.58 | 38.0 | 4.15e-01 | 86.2% | 88.0% |
| 4200177 | 3894.1.1.3 ↗ | beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › GtfB_M | 0.58 | 43.0 | 3.40e-01 | 78.5% | 41.5% |
| 4245602 | 1001.1.1.1 ↗ | a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Molybdop_Fe4S4 | 0.58 | 43.0 | 4.38e-01 | 87.7% | 81.5% |
| 4943238 | 244.1.1.4 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › DAO | 0.57 | 46.0 | 3.62e-01 | 92.3% | 40.7% |
| 4127509 | 3292.1.1.1 ↗ | a+b complex topology › Adenine deaminase 2 C-terminal domain › Adenine deaminase 2 C-terminal domain › Adenine deaminase 2 C-terminal domain › Adenine_deam_C | 0.57 | 47.0 | 3.41e-01 | 96.9% | 97.1% |
| 4278706 | 1001.1.1.1 ↗ | a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Molybdop_Fe4S4 | 0.57 | 42.0 | 4.36e-01 | 89.2% | 88.3% |
| 3702536 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.56 | 47.0 | 3.47e-01 | 96.9% | 63.8% |
| 3921418 | 233.1.1.0 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain | 0.56 | 42.0 | 3.93e-01 | 96.9% | 63.5% |
| 3217366 | 389.1.2.3 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › DUF282 | 0.55 | 42.0 | 4.07e-01 | 83.1% | 79.5% |
| 3889588 | 233.1.1.1 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I | 0.55 | 38.0 | 2.84e-01 | 72.3% | 84.0% |
| 4645958 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.54 | 45.0 | 4.64e-01 | 89.2% | 100.0% |
| 4338928 | 233.1.1.6 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I_3 | 0.54 | 39.0 | 3.55e-01 | 76.9% | 90.0% |
| 5008358 | 1001.1.1.1 ↗ | a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Molybdop_Fe4S4 | 0.54 | 41.0 | 4.38e-01 | 89.2% | 98.2% |
| 3886813 | 233.1.1.0 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain | 0.54 | 38.0 | 3.62e-01 | 78.5% | 97.6% |
| 3386801 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 40.0 | 3.53e-01 | 83.1% | 98.0% |
| 4144799 | 2.1.1.14 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N | 0.53 | 38.0 | 3.76e-01 | 78.5% | 82.9% |
| 3779694 | 2004.1.1.356 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SLFN_GTPase-like | 0.52 | 46.0 | 2.75e-01 | 100.0% | 17.6% |
| 3908192 | 3338.2.1.0 ↗ | a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB | 0.52 | 43.0 | 3.84e-01 | 95.4% | 70.0% |
| 3979229 | 1001.1.1.1 ↗ | a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Molybdop_Fe4S4 | 0.52 | 41.0 | 4.00e-01 | 86.2% | 81.4% |
| 5033604 | 3080.1.1.0 ↗ | a+b complex topology › Necrosis and ethylene-inducing peptide 1-like proteins › Necrosis and ethylene-inducing peptide 1-like proteins › Necrosis and ethylene-inducing peptide 1-like proteins | 0.52 | 43.0 | 3.14e-01 | 98.5% | 40.0% |
| 3264096 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.50 | 37.0 | 3.16e-01 | 83.1% | 61.7% |
| 4353919 | 2007.1.1.10 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › GATase_3 | 0.50 | 37.0 | 2.69e-01 | 84.6% | 50.7% |
| 3708791 | 77.3.1.3 ↗ | beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › MORN | 0.50 | 42.0 | 3.04e-01 | 100.0% | 30.5% |
| 4934833 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.50 | 36.0 | 2.97e-01 | 78.5% | 43.8% |