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sw_7_scaffold_1_prodigal-single.1__X__X__00136
Bact-Virsw_7_scaffold_1_prodigal-single.1__X__X__00136
Identity
- Kingdom:
- phage
Quality
70.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 77-130
Domain cluster:
rep: MW291018.1__QPL14178.1__SEA_ATRAXI_24__00024__D75-128
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03118.22 best | RNA_pol_A_CTD | 28.3 | 1.60e-06 | 92.6% | 70.2% |
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1doqA00 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.80 | 71.0 | 6.56e-01 | 100.0% | 79.7% |
| 1y88A02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.75 | 64.0 | 6.32e-01 | 100.0% | 94.9% |
| 2i1qA01 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.70 | 58.0 | 5.67e-01 | 100.0% | 95.2% |
| 4biuE01 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.69 | 43.0 | 3.46e-01 | 98.1% | 34.7% |
| 2q0zX02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.66 | 57.0 | 5.60e-01 | 100.0% | 94.8% |
| 2w9bA03 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.65 | 52.0 | 5.02e-01 | 100.0% | 79.1% |
| 2uubR00 | 4.10.640.10 | Few Secondary Structures › Irregular › 30s Ribosomal Protein S18 › Ribosomal protein S18 | 0.64 | 47.0 | 4.26e-01 | 77.8% | 74.0% |
| 1uxdA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.64 | 47.0 | 4.65e-01 | 98.1% | 74.6% |
| 3s6jE02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.58 | 50.0 | 4.64e-01 | 100.0% | 81.2% |
| 2vixA03 | 1.20.1280.240 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.58 | 45.0 | 3.81e-01 | 100.0% | 59.3% |
| 1j54A00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.57 | 45.0 | 3.26e-01 | 90.7% | 59.2% |
| 1vquA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.57 | 43.0 | 4.06e-01 | 100.0% | 67.2% |
| 1d8bA00 | 1.10.150.80 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain | 0.57 | 46.0 | 4.16e-01 | 96.3% | 72.8% |
| 3oqcA02 | 3.90.70.130 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.57 | 37.0 | 2.52e-01 | 94.4% | 17.5% |
| 4fx0A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 44.0 | 3.44e-01 | 100.0% | 38.5% |
| 2elcA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.56 | 41.0 | 3.87e-01 | 100.0% | 62.7% |
| 4gtnA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.55 | 42.0 | 3.85e-01 | 100.0% | 60.8% |
| 1zvwA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.55 | 42.0 | 3.94e-01 | 100.0% | 68.2% |
| 4muoA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.53 | 43.0 | 3.93e-01 | 100.0% | 68.1% |
| 1uouA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.53 | 40.0 | 3.76e-01 | 100.0% | 66.2% |
| 3h5qA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.52 | 39.0 | 3.69e-01 | 100.0% | 64.3% |
| 2kn6A02 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.52 | 45.0 | 3.95e-01 | 100.0% | 70.7% |
| 2honA02 | 1.20.1250.30 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.51 | 41.0 | 3.13e-01 | 96.3% | 97.9% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4474556 | 102.1.1.9 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_A_CTD | 0.94 | 86.0 | 8.28e-01 | 98.1% | 91.7% |
| 4559902 | 102.1.1.9 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_A_CTD | 0.92 | 83.0 | 7.53e-01 | 98.1% | 78.6% |
| 4201496 | 102.1.1.9 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_A_CTD | 0.91 | 83.0 | 7.35e-01 | 100.0% | 74.7% |
| 4228076 | 102.1.1.9 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_A_CTD | 0.90 | 82.0 | 7.72e-01 | 100.0% | 86.2% |
| 4155947 | 102.1.1.9 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_A_CTD | 0.89 | 81.0 | 7.86e-01 | 100.0% | 93.3% |
| 4165308 | 102.1.1.9 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_A_CTD | 0.88 | 80.0 | 7.69e-01 | 100.0% | 93.3% |
| 4538575 | 102.1.1.9 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_A_CTD | 0.87 | 79.0 | 6.46e-01 | 100.0% | 57.9% |
| 4943380 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.80 | 69.0 | 6.95e-01 | 98.1% | 100.0% |
| 5056035 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.79 | 65.0 | 6.33e-01 | 92.6% | 86.7% |
| 4442475 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.79 | 67.0 | 6.35e-01 | 98.1% | 78.5% |
| 3606374 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.78 | 68.0 | 6.02e-01 | 100.0% | 73.8% |
| 3717161 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.77 | 67.0 | 5.96e-01 | 100.0% | 73.8% |
| 4989822 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.77 | 65.0 | 6.50e-01 | 96.3% | 98.2% |
| 5052765 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.76 | 65.0 | 6.04e-01 | 100.0% | 84.3% |
| 4949725 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.75 | 64.0 | 5.99e-01 | 100.0% | 80.0% |
| 3591519 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.75 | 65.0 | 6.00e-01 | 100.0% | 85.7% |
| 3240039 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.74 | 65.0 | 5.87e-01 | 100.0% | 84.0% |
| 3403272 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.74 | 65.0 | 6.17e-01 | 100.0% | 84.6% |
| 5044794 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.73 | 62.0 | 5.93e-01 | 98.1% | 92.3% |
| 3895315 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.73 | 60.0 | 5.08e-01 | 92.6% | 62.2% |
| 4952232 | 102.5.1.1 ↗ | alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › HHH_5 | 0.72 | 61.0 | 5.80e-01 | 100.0% | 84.6% |
| 4960209 | 102.5.1.1 ↗ | alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › HHH_5 | 0.71 | 61.0 | 5.92e-01 | 96.3% | 95.0% |
| 4185537 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.71 | 60.0 | 5.99e-01 | 100.0% | 96.4% |
| 3919158 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.71 | 61.0 | 5.92e-01 | 98.1% | 93.3% |
| 4032279 | 102.1.1.51 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › IMS_HHH_1 | 0.70 | 59.0 | 5.74e-01 | 94.4% | 86.7% |
| 5059496 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.70 | 53.0 | 5.47e-01 | 79.6% | 98.0% |
| 5022597 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.70 | 62.0 | 5.84e-01 | 100.0% | 86.2% |
| 4977890 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.69 | 58.0 | 5.54e-01 | 100.0% | 84.6% |
| None | — | 0.69 | 56.0 | 5.62e-01 | 94.4% | 94.5% | |
| 3389838 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.68 | 59.0 | 5.33e-01 | 100.0% | 82.7% |
| 3605709 | 102.1.1.16 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_2 | 0.68 | 59.0 | 5.01e-01 | 100.0% | 67.8% |
| 4942883 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.67 | 57.0 | 5.67e-01 | 98.1% | 94.5% |
| 4946582 | 102.1.1.183 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › IMS_C | 0.67 | 54.0 | 5.17e-01 | 92.6% | 78.5% |
| 4939154 | 102.1.1.100 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › PF29713 | 0.67 | 58.0 | 5.77e-01 | 100.0% | 96.4% |
| 3588005 | 102.1.1.51 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › IMS_HHH_1 | 0.67 | 54.0 | 5.08e-01 | 94.4% | 74.3% |
| 4420914 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.66 | 55.0 | 5.33e-01 | 94.4% | 86.7% |
| 3688549 | 102.5.1.0 ↗ | alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins | 0.66 | 56.0 | 5.47e-01 | 100.0% | 100.0% |
| 3981247 | 132.1.1.1 ↗ | alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding | 0.63 | 46.0 | 4.15e-01 | 100.0% | 57.3% |
| 4323336 | 7516.1.1.61 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Mannosyl_trans3 | 0.60 | 49.0 | 2.96e-01 | 100.0% | 79.4% |
| 3211916 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.58 | 44.0 | 3.10e-01 | 83.3% | 56.7% |
| 3721242 | 6026.1.1.0 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain | 0.57 | 45.0 | 4.00e-01 | 90.7% | 88.1% |
| 3958989 | 184.1.1.0 ↗ | alpha arrays › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N | 0.56 | 42.0 | 3.91e-01 | 100.0% | 64.3% |
| 4196863 | 184.1.1.1 ↗ | alpha arrays › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Glycos_trans_3N | 0.55 | 42.0 | 3.87e-01 | 100.0% | 64.3% |
| 3706420 | 223.2.1.20 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_1 | 0.55 | 42.0 | 3.08e-01 | 88.9% | 29.4% |
| 134979 | 184.1.1.1 ↗ | alpha arrays › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Glycos_trans_3N | 0.52 | 39.0 | 3.64e-01 | 100.0% | 61.6% |