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sw_7_scaffold_1_prodigal-single.1__X__X__00153
Bact-Virsw_7_scaffold_1_prodigal-single.1__X__X__00153
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-97
Domain cluster:
representative
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bdrA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.72 | 57.0 | 4.73e-01 | 82.1% | 96.8% |
| 1lfoA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.71 | 52.0 | 4.67e-01 | 75.8% | 100.0% |
| 7snsB01 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.68 | 51.0 | 4.27e-01 | 80.0% | 74.1% |
| 8bddA02 | 2.70.98.70 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.67 | 54.0 | 3.61e-01 | 85.3% | 78.9% |
| 2lezA00 | 3.30.2450.10 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 | 0.65 | 44.0 | 4.03e-01 | 91.6% | 54.2% |
| 2gq1A01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.65 | 48.0 | 3.99e-01 | 78.9% | 75.3% |
| 2w4yA00 | 2.40.160.220 | Mainly Beta › Beta Barrel › Porin › | 0.64 | 49.0 | 4.56e-01 | 83.2% | 90.2% |
| 3s6pA03 | 2.60.270.70 | Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › | 0.63 | 53.0 | 4.58e-01 | 89.5% | 83.1% |
| 2a0aA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.63 | 45.0 | 4.14e-01 | 75.8% | 98.5% |
| 7wa9A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.63 | 47.0 | 4.14e-01 | 78.9% | 87.9% |
| 1ospO02 | 3.90.930.1 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › | 0.62 | 53.0 | 4.59e-01 | 92.6% | 94.5% |
| 3rc2A02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.62 | 44.0 | 3.52e-01 | 73.7% | 76.3% |
| 1p32B00 | 3.10.280.10 | Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein | 0.62 | 53.0 | 4.32e-01 | 92.6% | 64.3% |
| 7ob9B01 | 3.90.1110.10 | Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 | 0.61 | 42.0 | 3.36e-01 | 70.5% | 77.6% |
| 1o8vA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.61 | 44.0 | 4.01e-01 | 76.8% | 100.0% |
| 1yqfB00 | 3.10.280.10 | Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein | 0.61 | 52.0 | 4.22e-01 | 92.6% | 68.4% |
| 3c6kA01 | 3.30.160.110 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain | 0.61 | 44.0 | 4.51e-01 | 80.0% | 77.7% |
| 2xe4A02 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.61 | 46.0 | 3.12e-01 | 80.0% | 36.4% |
| 1ei5A03 | 2.40.128.50 | Mainly Beta › Beta Barrel › Lipocalin › | 0.60 | 45.0 | 4.47e-01 | 80.0% | 94.1% |
| 1t6lA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.60 | 48.0 | 3.54e-01 | 86.3% | 96.4% |
| 1iucA00 | 2.120.10.70 | Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin | 0.59 | 43.0 | 2.99e-01 | 75.8% | 44.9% |
| 1nycA00 | 2.40.310.10 | Mainly Beta › Beta Barrel › Staphostatins › beta-Barrel protease inhibitors | 0.59 | 47.0 | 4.54e-01 | 87.4% | 89.2% |
| 2v43A01 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.59 | 45.0 | 3.60e-01 | 86.3% | 42.1% |
| 3dueA00 | 3.40.1420.30 | Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › | 0.58 | 46.0 | 4.17e-01 | 84.2% | 73.2% |
| 2nvnA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.56 | 41.0 | 3.84e-01 | 98.9% | 60.8% |
| 1sgoA01 | 3.30.2280.10 | Alpha Beta › 2-Layer Sandwich › copper amine oxidase-like fold › Hypothetical protein (hspc210) | 0.56 | 46.0 | 4.41e-01 | 90.5% | 78.7% |
| 1ohfA03 | 2.60.270.70 | Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › | 0.55 | 44.0 | 3.95e-01 | 88.4% | 83.0% |
| 7c38B01 | 2.120.10.70 | Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin | 0.55 | 44.0 | 3.12e-01 | 88.4% | 82.9% |
| 1qj8A00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.54 | 45.0 | 3.90e-01 | 91.6% | 88.5% |
| 2avtA02 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.53 | 40.0 | 3.13e-01 | 78.9% | 96.5% |
| 3h7jA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.53 | 42.0 | 4.04e-01 | 100.0% | 73.6% |
| 4g59B00 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.53 | 42.0 | 3.66e-01 | 91.6% | 83.4% |
| 2ywqA00 | 3.30.160.100 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like | 0.52 | 43.0 | 4.41e-01 | 100.0% | 100.0% |
| 1mhmA00 | 3.60.90.10 | Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase | 0.52 | 41.0 | 3.07e-01 | 86.3% | 34.4% |
| 3ge2A00 | 2.40.128.50 | Mainly Beta › Beta Barrel › Lipocalin › | 0.52 | 41.0 | 4.24e-01 | 88.4% | 91.0% |
| 3tqmA00 | 3.30.160.100 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like | 0.51 | 41.0 | 4.25e-01 | 100.0% | 97.8% |
| 2m4lA00 | 2.40.128.360 | Mainly Beta › Beta Barrel › Lipocalin › | 0.51 | 45.0 | 4.48e-01 | 95.8% | 93.9% |
| 4gq1A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 44.0 | 3.07e-01 | 100.0% | 66.3% |
| 2o1uB01 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.50 | 43.0 | 3.71e-01 | 100.0% | 66.7% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3721965 | 220.1.1.74 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PIG-H | 0.77 | 53.0 | 4.95e-01 | 70.5% | 81.7% |
| 4225063 | 3840.1.1.2 ↗ | a+b two layers › Bacterial conjugation factor PsiB › Bacterial conjugation factor PsiB › Bacterial conjugation factor PsiB › PerB | 0.74 | 63.0 | 5.97e-01 | 91.6% | 81.8% |
| 3062889 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.68 | 52.0 | 4.21e-01 | 80.0% | 69.0% |
| 5009577 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.64 | 48.0 | 4.39e-01 | 78.9% | 83.2% |
| 3807776 | 5.1.3.118 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 | 0.64 | 46.0 | 3.16e-01 | 74.7% | 32.6% |
| 6659 | 4350.1.1.1 ↗ | a+b two layers › PG1388-like › PG1388-like › PG1388-like › DUF3256 | 0.64 | 48.0 | 3.82e-01 | 81.1% | 54.8% |
| 3420430 | 511.1.1.1 ↗ | beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › HSP70 | 0.63 | 47.0 | 4.19e-01 | 78.9% | 85.2% |
| 3244934 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.63 | 47.0 | 3.22e-01 | 78.9% | 25.8% |
| 1141888 | 331.10.2.2 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › SpmSyn_N | 0.61 | 45.0 | 4.50e-01 | 78.9% | 76.0% |
| 3275111 | 5.1.4.304 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR11_2nd | 0.60 | 43.0 | 2.92e-01 | 73.7% | 26.8% |
| 4971247 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.60 | 43.0 | 4.59e-01 | 80.0% | 88.7% |
| 3853086 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.60 | 47.0 | 3.23e-01 | 85.3% | 92.9% |
| 3706423 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.59 | 41.0 | 2.76e-01 | 73.7% | 30.9% |
| 4003932 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.59 | 48.0 | 4.48e-01 | 89.5% | 99.2% |
| 3778085 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.59 | 46.0 | 3.04e-01 | 85.3% | 85.5% |
| 3883680 | 5.1.4.12 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema | 0.58 | 50.0 | 3.24e-01 | 97.9% | 61.6% |
| 4962147 | 2003.1.1.391 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GFO_IDH_MocA_C3 | 0.58 | 47.0 | 3.20e-01 | 87.4% | 40.8% |
| 5041541 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.58 | 44.0 | 4.58e-01 | 82.1% | 88.9% |
| 3627380 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.58 | 43.0 | 2.98e-01 | 78.9% | 53.2% |
| 5048803 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.58 | 46.0 | 3.10e-01 | 100.0% | 22.5% |
| 3628642 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.58 | 43.0 | 2.90e-01 | 78.9% | 53.4% |
| 3749834 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.58 | 34.0 | 4.10e-01 | 98.9% | 98.2% |
| 4868007 | 5.1.2.4 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › NHL | 0.58 | 43.0 | 3.17e-01 | 78.9% | 48.0% |
| 3718996 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.56 | 44.0 | 2.86e-01 | 87.4% | 48.5% |
| 5022798 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.55 | 41.0 | 2.58e-01 | 76.8% | 23.7% |
| 3332764 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.55 | 38.0 | 3.98e-01 | 83.2% | 80.0% |
| 5042381 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.55 | 48.0 | 3.22e-01 | 100.0% | 23.8% |
| 5052460 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.53 | 40.0 | 2.78e-01 | 81.1% | 40.3% |
| 5051699 | 331.10.2.1 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › AdoMet_dc | 0.53 | 41.0 | 3.94e-01 | 82.1% | 81.8% |
| 3630423 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.52 | 38.0 | 4.01e-01 | 75.8% | 89.4% |
| 3716632 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.52 | 42.0 | 3.68e-01 | 86.3% | 93.1% |
| 3974178 | 331.10.2.1 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › AdoMet_dc | 0.52 | 40.0 | 3.48e-01 | 82.1% | 79.3% |
| 4768813 | 331.10.1.1 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › S-adenosylmethionine decarboxylase › SAM_decarbox | 0.52 | 41.0 | 3.20e-01 | 86.3% | 40.1% |
| 4561982 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.51 | 45.0 | 3.66e-01 | 100.0% | 60.5% |
| 5061484 | 331.10.2.1 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › AdoMet_dc | 0.51 | 40.0 | 3.81e-01 | 85.3% | 74.6% |
| 3183049 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.51 | 38.0 | 2.56e-01 | 80.0% | 31.0% |
| 3600529 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.51 | 39.0 | 3.85e-01 | 85.3% | 96.2% |
| 3719326 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.51 | 46.0 | 2.99e-01 | 97.9% | 44.9% |
| 4029821 | 5.1.10.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed | 0.50 | 41.0 | 3.09e-01 | 88.4% | 53.0% |