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sw_7_scaffold_1_prodigal-single.1__X__X__00164

Bact-Vir

sw_7_scaffold_1_prodigal-single.1__X__X__00164

Identity

Kingdom:
phage

Quality

73.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 33-97
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 54.0 5.26e-01 100.0% 83.3%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.64 52.0 5.29e-01 98.5% 96.8%
5umsA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 50.0 4.33e-01 87.7% 63.7%
1f9qD00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 44.0 4.38e-01 84.6% 72.7%
4gzuA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 48.0 3.69e-01 89.2% 88.0%
5cbeE00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 41.0 4.16e-01 81.5% 71.9%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 47.0 4.34e-01 87.7% 70.9%
7oc3A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 48.0 4.41e-01 96.9% 67.4%
3qwmA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 48.0 3.95e-01 93.8% 66.9%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 45.0 4.66e-01 100.0% 91.9%
1x6oA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 41.0 3.93e-01 76.9% 100.0%
7tzoA01 1.10.1070.11 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain 0.58 43.0 3.17e-01 87.7% 29.9%
3s5wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 46.0 2.89e-01 93.8% 42.9%
2budA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 45.0 4.09e-01 95.4% 63.0%
1rjtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 41.0 3.99e-01 76.9% 82.2%
1vwxA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 46.0 4.36e-01 98.5% 75.0%
3htnB00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.57 49.0 3.85e-01 96.9% 48.2%
1vq8A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 37.0 3.56e-01 78.5% 56.4%
6vp6A03 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 47.0 2.94e-01 89.2% 23.6%
2jkgA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.57 41.0 3.14e-01 78.5% 70.9%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 47.0 4.61e-01 95.4% 87.5%
5zr6A02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.56 46.0 4.46e-01 96.9% 88.2%
3hwuA00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.56 48.0 3.77e-01 98.5% 49.3%
4id2A00 2.40.128.510 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 0.55 44.0 3.51e-01 89.2% 73.5%
5v6fA00 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.55 43.0 3.57e-01 93.8% 97.8%
3fyfA00 2.40.128.410 Mainly Beta › Beta Barrel › Lipocalin › 0.54 42.0 3.34e-01 87.7% 77.2%
2dt4A00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.54 46.0 3.62e-01 96.9% 49.7%
2hx0A01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.54 45.0 3.66e-01 96.9% 47.7%
3l8kA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 44.0 3.64e-01 93.8% 96.8%
4aw8A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 41.0 3.14e-01 89.2% 67.2%
2v1rA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 42.0 4.24e-01 93.8% 88.1%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.53 40.0 4.26e-01 87.7% 96.4%
1xezA04 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.53 43.0 3.59e-01 100.0% 96.3%
3lm4A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 38.0 3.02e-01 76.9% 84.6%
4pz6A02 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.53 44.0 3.04e-01 95.4% 88.6%
5xyig01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 42.0 2.75e-01 89.2% 23.7%
3d30A02 2.60.40.760 Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain 0.52 41.0 3.55e-01 81.5% 97.9%
3ghjA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 39.0 3.29e-01 83.1% 82.8%
4krtB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 42.0 4.18e-01 93.8% 95.5%
4qycB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 39.0 3.35e-01 80.0% 81.8%
3stjA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 36.0 3.37e-01 95.4% 57.6%
2qh0A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 36.0 2.99e-01 76.9% 99.2%
5t1dB00 3.10.390.20 Alpha Beta › Roll › SAND domain › Viral glycoprotein L 0.51 34.0 3.01e-01 78.5% 45.5%
1ugiD00 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.51 39.0 3.72e-01 87.7% 69.5%
1ej6B00 3.90.1830.10 Alpha Beta › Alpha-Beta Complex › Inner capsid protein lambda-1 › Inner capsid protein lambda-1 0.50 41.0 2.28e-01 92.3% 9.4%
4yo1A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.50 35.0 3.21e-01 95.4% 53.9%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3890518 2484.1.1.239 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Dimer_Tnp_hAT, PF27046, PF27073 0.67 48.0 2.84e-01 76.9% 17.1%
3251420 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 56.0 5.13e-01 100.0% 80.0%
3923261 2484.1.1.230 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27073 0.64 47.0 3.87e-01 78.5% 71.7%
3347210 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 51.0 4.66e-01 90.8% 94.3%
3899072 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.61 42.0 4.11e-01 83.1% 64.3%
3836701 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.61 51.0 3.98e-01 93.8% 57.4%
3643995 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.61 50.0 3.81e-01 90.8% 52.3%
3811669 2.1.1.130 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.60 43.0 3.68e-01 76.9% 87.3%
4864284 5.1.4.267 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF28639 0.60 49.0 3.69e-01 90.8% 52.8%
3311131 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.60 51.0 3.74e-01 95.4% 47.0%
3591209 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 41.0 4.23e-01 70.8% 81.7%
1700100 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.60 41.0 4.27e-01 83.1% 75.4%
3355345 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 40.0 3.94e-01 70.8% 82.9%
3482507 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.59 47.0 2.85e-01 87.7% 25.4%
5033415 5.1.5.11 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PQQ_2 0.59 46.0 2.85e-01 86.2% 20.3%
3859059 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.58 42.0 3.79e-01 81.5% 55.6%
4051690 220.1.1.126 beta barrels › PH domain-like › PH domain-like › PH domain-like › Ycf4 0.58 46.0 3.99e-01 90.8% 76.2%
3179214 2003.1.2.29 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NAD_binding_8 0.57 47.0 2.93e-01 93.8% 38.6%
3765502 4.1.1.50 beta barrels › SH3 › SH3 › SH3 › MIB_HERC2 0.57 47.0 4.17e-01 95.4% 66.0%
4040055 4.26.1.1 beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › Cren7 0.57 42.0 4.45e-01 87.7% 87.9%
3505861 2484.1.1.204 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27046, PF27073 0.57 42.0 2.86e-01 81.5% 31.9%
424192 2003.1.2.28 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Lys_Orn_oxgnase 0.57 46.0 3.56e-01 93.8% 95.7%
4818765 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 42.0 4.32e-01 84.6% 85.0%
4203232 5.1.4.36 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.57 47.0 2.84e-01 89.2% 21.1%
3704471 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 42.0 3.84e-01 83.1% 64.4%
5023617 4111.1.1.2 a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.55 47.0 3.76e-01 96.9% 46.7%
3235681 5.1.4.36 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.55 46.0 2.73e-01 89.2% 18.7%
3894564 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.55 41.0 3.86e-01 83.1% 62.7%
4978367 4111.1.1.2 a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.55 46.0 3.67e-01 96.9% 54.5%
3434770 3556.1.1.1 a+b two layers › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › DUF3223 0.55 44.0 3.81e-01 89.2% 56.2%
3879163 247.1.1.31 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_4, Anti-Pycsar_Apyc1 0.55 40.0 2.31e-01 76.9% 26.2%
5052595 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.55 41.0 2.53e-01 84.6% 26.2%
4295522 3556.1.1.1 a+b two layers › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › DUF3223 0.54 43.0 3.69e-01 89.2% 54.3%
3991896 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.54 46.0 4.17e-01 100.0% 73.7%
None 0.54 43.0 2.67e-01 93.8% 62.2%
3586562 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 44.0 4.10e-01 100.0% 72.9%
3918073 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.53 40.0 3.94e-01 86.2% 75.7%
3933112 206.1.1.8 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PI3_PI4_kinase,FATC 0.53 44.0 2.68e-01 92.3% 23.4%
3561257 252.1.1.1 a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD 0.53 41.0 4.13e-01 95.4% 83.1%
3794445 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.53 44.0 4.23e-01 100.0% 82.5%
3575435 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.53 41.0 3.70e-01 92.3% 61.1%
4134242 4.1.1.129 beta barrels › SH3 › SH3 › SH3 › Tudor_5 0.53 45.0 3.81e-01 100.0% 57.4%
3659060 3556.1.1.1 a+b two layers › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › DUF3223 0.53 42.0 3.49e-01 89.2% 50.0%
4981225 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 41.0 3.43e-01 81.5% 92.4%
5023115 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.52 36.0 3.68e-01 98.5% 73.8%
3915850 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.52 38.0 2.39e-01 84.6% 35.8%
4578663 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.52 41.0 4.04e-01 86.2% 80.0%
3276895 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 42.0 2.56e-01 87.7% 15.4%
3684267 5.1.10.15 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › RPE65 0.51 39.0 3.12e-01 95.4% 40.8%
3236367 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.51 43.0 3.46e-01 100.0% 83.4%
3741655 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 41.0 2.55e-01 87.7% 64.0%
3707461 218.1.1.2 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › Enolase_N 0.51 42.0 3.24e-01 87.7% 83.7%
1936538 3146.1.1.3 a+b complex topology › gH main domain › gH main domain › gH main domain › Phage_glycop_gL 0.51 34.0 3.01e-01 78.5% 45.5%
3939634 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.51 37.0 3.22e-01 83.1% 76.5%
3839254 601.52.1.2 alpha bundles › Four-helical up-and-down bundle › Flagellar hook-associated protein 1 helical domain › Flagellar hook-associated protein 1 helical domain › FlgK_D1 0.51 41.0 2.60e-01 92.3% 31.5%
5031565 211.1.1.7 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase_4 0.50 35.0 2.92e-01 75.4% 100.0%