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sw_7_scaffold_1_prodigal-single.1__X__X__00175
Bact-Virsw_7_scaffold_1_prodigal-single.1__X__X__00175
Identity
- Kingdom:
- phage
Quality
72.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-60
Domain cluster:
rep: NC_054957.1__YP_010078274.1__KMC45_gp10__00010__D27-76
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6hjfA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.68 | 56.0 | 4.04e-01 | 93.2% | 78.4% |
| 6m9yA00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.66 | 44.0 | 4.54e-01 | 71.2% | 71.9% |
| 3ke6B01 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.63 | 43.0 | 2.95e-01 | 72.9% | 35.7% |
| 3ci0I00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.62 | 49.0 | 4.44e-01 | 89.8% | 71.1% |
| 1llnA01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.61 | 46.0 | 3.29e-01 | 81.4% | 33.7% |
| 4ca1B02 | 2.60.210.10 | Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 0.60 | 42.0 | 3.29e-01 | 74.6% | 81.8% |
| 5bw0F00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.60 | 47.0 | 4.15e-01 | 89.8% | 64.8% |
| 3dtdD00 | 2.60.40.1880 | Mainly Beta › Sandwich › Immunoglobulin-like › Invasion associated locus B (IalB) protein | 0.60 | 41.0 | 3.26e-01 | 76.3% | 80.7% |
| 3holA03 | 2.40.128.240 | Mainly Beta › Beta Barrel › Lipocalin › | 0.59 | 51.0 | 4.46e-01 | 96.6% | 65.2% |
| 1jhnA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.59 | 42.0 | 2.84e-01 | 76.3% | 19.8% |
| 5ee2A00 | 2.40.160.90 | Mainly Beta › Beta Barrel › Porin › | 0.58 | 49.0 | 3.97e-01 | 100.0% | 73.0% |
| 4jglA00 | 2.40.128.530 | Mainly Beta › Beta Barrel › Lipocalin › | 0.58 | 45.0 | 3.41e-01 | 86.4% | 50.7% |
| 7z0sE02 | 1.10.645.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B | 0.57 | 48.0 | 3.11e-01 | 96.6% | 86.8% |
| 3fc7A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.56 | 46.0 | 4.03e-01 | 98.3% | 89.0% |
| 3bxoA02 | 2.20.130.10 | Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains | 0.56 | 37.0 | 3.77e-01 | 100.0% | 69.5% |
| 4aghA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.55 | 40.0 | 3.76e-01 | 81.4% | 62.5% |
| 7wa9A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.55 | 43.0 | 3.44e-01 | 91.5% | 59.6% |
| 6gszA05 | 2.60.420.10 | Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 | 0.55 | 36.0 | 3.38e-01 | 83.1% | 50.0% |
| 1bf5A04 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.55 | 40.0 | 3.36e-01 | 81.4% | 46.9% |
| 2qzbA00 | 2.60.460.10 | Mainly Beta › Sandwich › protein yfey like fold › protein yfey like domain | 0.55 | 45.0 | 3.43e-01 | 93.2% | 42.1% |
| 3wirA03 | 2.60.420.10 | Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 | 0.54 | 42.0 | 4.05e-01 | 100.0% | 73.9% |
| 5aj3P00 | 3.30.1320.10 | Alpha Beta › 2-Layer Sandwich › S16 Ribosomal Protein; Chain: A; › Ribosomal protein S16 | 0.54 | 40.0 | 3.24e-01 | 100.0% | 40.2% |
| 1vi7A01 | 3.30.230.30 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › Impact, N-terminal domain | 0.54 | 36.0 | 2.95e-01 | 71.2% | 71.9% |
| 3caxA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.53 | 42.0 | 3.35e-01 | 94.9% | 67.4% |
| 2x10A01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.53 | 41.0 | 3.02e-01 | 84.7% | 84.6% |
| 1tkjA00 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.53 | 41.0 | 2.76e-01 | 91.5% | 97.1% |
| 4i79A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 45.0 | 2.83e-01 | 100.0% | 18.0% |
| 2vsmA00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.52 | 42.0 | 2.64e-01 | 100.0% | 16.9% |
| 2jhnA01 | 3.30.310.20 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain | 0.52 | 40.0 | 3.34e-01 | 88.1% | 54.9% |
| 3op1A02 | 2.40.30.30 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like | 0.51 | 40.0 | 3.48e-01 | 96.6% | 56.8% |
| 3w9kA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 43.0 | 3.38e-01 | 100.0% | 43.7% |
| 7jjtA01 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.50 | 41.0 | 3.58e-01 | 88.1% | 98.9% |
| 2k75A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.50 | 35.0 | 3.08e-01 | 78.0% | 85.4% |
ECOD (65)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3449580 | 7502.1.1.2 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Brix | 0.73 | 50.0 | 3.44e-01 | 71.2% | 23.1% |
| 3249895 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.71 | 51.0 | 4.84e-01 | 76.3% | 72.9% |
| 3583262 | 11.8.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Osmotin-like › Osmotin-like | 0.66 | 54.0 | 4.69e-01 | 93.2% | 97.9% |
| 3262671 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.66 | 50.0 | 2.80e-01 | 81.4% | 9.4% |
| 4009551 | 11.1.4.25 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › PapC_C | 0.65 | 55.0 | 4.96e-01 | 96.6% | 97.6% |
| 3998298 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.64 | 53.0 | 3.69e-01 | 94.9% | 35.2% |
| 4142339 | 4099.1.1.4 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-O | 0.64 | 46.0 | 3.53e-01 | 78.0% | 35.0% |
| 2061059 | 101.1.2.131 ↗ | alpha arrays › HTH › HTH › winged helix domain › RctB_central | 0.62 | 49.0 | 3.58e-01 | 89.8% | 63.3% |
| 3729234 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.62 | 52.0 | 3.34e-01 | 98.3% | 82.0% |
| 3950217 | 7579.1.1.3 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9 | 0.62 | 42.0 | 2.68e-01 | 71.2% | 23.6% |
| 5083330 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.61 | 49.0 | 2.84e-01 | 94.9% | 16.6% |
| 4959266 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.61 | 48.0 | 3.28e-01 | 94.9% | 37.0% |
| 3972681 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.61 | 48.0 | 4.18e-01 | 89.8% | 61.7% |
| 5055900 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.60 | 53.0 | 4.05e-01 | 100.0% | 69.3% |
| 3735680 | 2008.1.1.143 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF7924 | 0.60 | 50.0 | 3.28e-01 | 98.3% | 83.4% |
| 1866758 | 274.1.1.4 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSI | 0.60 | 47.0 | 4.15e-01 | 89.8% | 64.8% |
| 3734714 | 2008.1.1.143 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF7924 | 0.59 | 49.0 | 3.34e-01 | 100.0% | 81.9% |
| 3379239 | 3887.2.1.1 ↗ | a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung | 0.59 | 46.0 | 3.85e-01 | 88.1% | 72.7% |
| 3998891 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.59 | 44.0 | 2.94e-01 | 79.7% | 92.0% |
| 3699929 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.59 | 50.0 | 3.67e-01 | 98.3% | 63.5% |
| 3595541 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.59 | 49.0 | 3.22e-01 | 96.6% | 35.4% |
| 3703112 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.59 | 49.0 | 3.98e-01 | 96.6% | 68.3% |
| 5078190 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.59 | 46.0 | 3.07e-01 | 93.2% | 20.0% |
| 5056462 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.58 | 48.0 | 4.34e-01 | 98.3% | 90.0% |
| 3391728 | 3459.1.1.1 ↗ | beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › FAIM1 | 0.58 | 49.0 | 4.40e-01 | 96.6% | 92.9% |
| 5028295 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.58 | 48.0 | 4.26e-01 | 100.0% | 86.3% |
| 3612153 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.58 | 49.0 | 3.37e-01 | 98.3% | 43.1% |
| 3334359 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.58 | 42.0 | 3.00e-01 | 78.0% | 80.6% |
| 2559760 | 216.1.1.5 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › BRE | 0.58 | 50.0 | 3.98e-01 | 100.0% | 47.9% |
| 5061264 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.57 | 50.0 | 4.56e-01 | 100.0% | 100.0% |
| 5051418 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.57 | 40.0 | 3.20e-01 | 76.3% | 83.7% |
| 3508519 | 271.1.1.5 ↗ | beta barrels › GFP-like › GFP-like › GFP-like › G2F | 0.57 | 47.0 | 3.30e-01 | 96.6% | 52.7% |
| 3942921 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 44.0 | 3.10e-01 | 89.8% | 58.1% |
| 3989328 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.56 | 51.0 | 4.31e-01 | 98.3% | 96.8% |
| 3230660 | 390.1.1.7 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_3 | 0.56 | 47.0 | 3.77e-01 | 96.6% | 95.2% |
| 3648209 | 3459.1.1.3 ↗ | beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › DUF868 | 0.56 | 46.0 | 3.74e-01 | 96.6% | 90.4% |
| 3473111 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.56 | 45.0 | 2.69e-01 | 91.5% | 17.5% |
| 3399554 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 37.0 | 2.83e-01 | 71.2% | 83.1% |
| 4992459 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.56 | 46.0 | 4.40e-01 | 93.2% | 100.0% |
| 4010890 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.55 | 47.0 | 3.66e-01 | 100.0% | 72.4% |
| 3706741 | 5.1.3.28 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 | 0.55 | 40.0 | 2.71e-01 | 79.7% | 35.9% |
| 3960453 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.55 | 43.0 | 3.34e-01 | 89.8% | 57.2% |
| 3624656 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.55 | 45.0 | 4.21e-01 | 98.3% | 72.0% |
| 3960994 | 7579.1.1.0 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases | 0.55 | 39.0 | 2.53e-01 | 78.0% | 24.8% |
| 3551009 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.55 | 44.0 | 3.17e-01 | 100.0% | 43.3% |
| 3642588 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.54 | 43.0 | 3.69e-01 | 93.2% | 94.3% |
| 4954762 | 241.1.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone | 0.54 | 43.0 | 3.40e-01 | 100.0% | 41.6% |
| 3517695 | 5.1.4.32 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nucleoporin_N | 0.54 | 45.0 | 2.73e-01 | 98.3% | 91.2% |
| 5078704 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.54 | 45.0 | 3.95e-01 | 94.9% | 73.3% |
| 4459946 | 223.1.1.6 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › dCache_1 | 0.53 | 44.0 | 2.97e-01 | 98.3% | 26.3% |
| 3785293 | 241.15.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain | 0.53 | 44.0 | 3.71e-01 | 100.0% | 60.9% |
| 4977365 | 304.107.1.1 ↗ | a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › GCV_T | 0.53 | 44.0 | 3.44e-01 | 94.9% | 46.9% |
| None | — | 0.53 | 36.0 | 3.28e-01 | 78.0% | 49.4% | |
| 3568250 | 4081.1.1.5 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N | 0.53 | 41.0 | 2.86e-01 | 91.5% | 41.7% |
| 3492201 | 295.1.1.1 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PC4 | 0.52 | 41.0 | 3.88e-01 | 100.0% | 72.0% |
| 3574976 | 4184.1.1.2 ↗ | beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b | 0.52 | 38.0 | 3.97e-01 | 96.6% | 89.1% |
| 4086062 | 5.1.3.20 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PD40 | 0.52 | 43.0 | 2.74e-01 | 100.0% | 17.1% |
| 3500307 | 306.3.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like | 0.52 | 36.0 | 2.93e-01 | 72.9% | 55.7% |
| 3826594 | 5.1.3.65 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 | 0.51 | 41.0 | 2.62e-01 | 88.1% | 54.8% |
| 3978531 | 223.1.1.58 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › 2CSK_N | 0.51 | 41.0 | 3.15e-01 | 94.9% | 45.8% |
| 4030728 | 5.1.4.661 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR36-Utp21_1st | 0.51 | 44.0 | 2.74e-01 | 100.0% | 22.5% |
| 3941128 | 4967.1.1.19 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › RT_RNaseH_2 | 0.51 | 42.0 | 3.32e-01 | 89.8% | 71.3% |
| 3415735 | 216.1.1.20 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like | 0.50 | 43.0 | 3.67e-01 | 100.0% | 58.9% |
| 3894645 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 40.0 | 3.42e-01 | 96.6% | 66.1% |
| 4976046 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.50 | 41.0 | 3.04e-01 | 91.5% | 34.4% |