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sw_7_scaffold_1_prodigal-single.1__X__X__00282
Bact-Virsw_7_scaffold_1_prodigal-single.1__X__X__00282
Identity
- Kingdom:
- phage
Quality
78.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 26-110
Domain cluster:
rep: KX925554.1__APC46352.1__X__00090__D2-78
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1aqbA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.63 | 52.0 | 4.12e-01 | 90.6% | 93.1% |
| 5c0pA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.59 | 38.0 | 2.66e-01 | 75.3% | 19.0% |
| 8gn6A01 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.58 | 40.0 | 2.68e-01 | 70.6% | 51.5% |
| 1xzpB00 | 3.30.1360.120 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 | 0.58 | 50.0 | 4.42e-01 | 98.8% | 68.7% |
| 2cdqA03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.57 | 41.0 | 4.17e-01 | 94.1% | 77.4% |
| 2j0wA03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.57 | 41.0 | 4.18e-01 | 95.3% | 79.0% |
| 1a15A00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.57 | 30.0 | 3.30e-01 | 77.6% | 62.7% |
| 3c6kA01 | 3.30.160.110 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain | 0.56 | 49.0 | 4.76e-01 | 98.8% | 90.4% |
| 3vsfC01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.56 | 48.0 | 3.22e-01 | 96.5% | 92.1% |
| 5jozA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.55 | 45.0 | 3.11e-01 | 90.6% | 98.4% |
| 2z0lA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.54 | 44.0 | 3.09e-01 | 90.6% | 88.3% |
| 4xrtA01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.54 | 45.0 | 3.92e-01 | 97.6% | 93.7% |
| 3zqsA01 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.54 | 40.0 | 4.04e-01 | 82.4% | 90.9% |
| 2rgjA02 | 3.30.9.30 | Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › | 0.53 | 48.0 | 3.59e-01 | 100.0% | 48.1% |
| 4f3lA03 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.53 | 40.0 | 3.56e-01 | 80.0% | 86.1% |
| 3tfzB00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.53 | 44.0 | 3.70e-01 | 97.6% | 88.5% |
| 2ffsA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.53 | 45.0 | 3.84e-01 | 96.5% | 96.6% |
| 5nslA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.53 | 40.0 | 2.58e-01 | 82.4% | 89.5% |
| 1uebA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 33.0 | 3.82e-01 | 81.2% | 87.3% |
| 4h0aA00 | 3.40.33.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP | 0.52 | 45.0 | 3.11e-01 | 95.3% | 39.4% |
| 1mhmA00 | 3.60.90.10 | Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase | 0.52 | 46.0 | 3.33e-01 | 100.0% | 78.3% |
| 1st8A02 | 2.60.120.560 | Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 | 0.52 | 38.0 | 3.02e-01 | 78.8% | 39.5% |
| 4qqsB00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.52 | 41.0 | 2.80e-01 | 85.9% | 69.6% |
| 2gzaA01 | 3.30.450.90 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.52 | 39.0 | 3.67e-01 | 82.4% | 76.9% |
| 1p9rA01 | 3.30.450.90 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.51 | 37.0 | 3.41e-01 | 77.6% | 75.7% |
| 1eurA00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.50 | 41.0 | 2.77e-01 | 91.8% | 97.8% |
| 2pt7C01 | 3.30.450.90 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.50 | 38.0 | 3.57e-01 | 82.4% | 84.0% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3426443 | 331.4.1.2 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF | 0.64 | 55.0 | 4.97e-01 | 96.5% | 70.0% |
| 3634274 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.64 | 49.0 | 4.55e-01 | 95.3% | 64.5% |
| 4028149 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.62 | 53.0 | 5.17e-01 | 96.5% | 100.0% |
| 5031724 | 331.2.1.0 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain | 0.61 | 52.0 | 5.14e-01 | 95.3% | 95.6% |
| 3518432 | 220.1.1.79 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › TBC1D23_C | 0.61 | 42.0 | 3.82e-01 | 71.8% | 72.2% |
| 3995113 | 331.4.1.1 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 | 0.60 | 51.0 | 4.97e-01 | 92.9% | 93.7% |
| 3896233 | 331.3.1.72 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › FANCAA | 0.60 | 52.0 | 4.77e-01 | 95.3% | 90.9% |
| 3245986 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.60 | 41.0 | 2.97e-01 | 78.8% | 26.1% |
| 3552839 | 11.1.1.795 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › FANCAA | 0.59 | 50.0 | 4.60e-01 | 92.9% | 91.8% |
| 4929578 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.59 | 51.0 | 4.62e-01 | 100.0% | 82.5% |
| 4330265 | 304.107.1.3 ↗ | a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › TrmE_N | 0.58 | 50.0 | 4.56e-01 | 97.6% | 75.7% |
| 3922452 | 244.1.1.17 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › RAE1_2_domI_C | 0.58 | 52.0 | 4.69e-01 | 100.0% | 91.3% |
| 1176764 | 244.1.1.17 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › RAE1_2_domI_C | 0.56 | 50.0 | 4.07e-01 | 100.0% | 56.4% |
| 3189704 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.56 | 50.0 | 4.41e-01 | 100.0% | 95.2% |
| 3716893 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.55 | 40.0 | 2.64e-01 | 80.0% | 35.9% |
| 3410256 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.55 | 41.0 | 3.08e-01 | 81.2% | 89.1% |
| 3731902 | 304.107.1.7 ↗ | a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › POP1_N+POPLD | 0.55 | 47.0 | 3.12e-01 | 100.0% | 25.1% |
| 4297022 | 5.1.3.26 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_2 | 0.55 | 41.0 | 2.57e-01 | 80.0% | 15.9% |
| 3243860 | 331.15.1.4 ↗ | a+b two layers › TBP-like › Anti-CRISPR protein AcrID1 › Anti-CRISPR protein AcrID1 › FTH | 0.54 | 40.0 | 3.37e-01 | 80.0% | 43.9% |
| 1602213 | 244.1.1.2 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › GDI | 0.54 | 47.0 | 4.51e-01 | 100.0% | 87.8% |
| 3265608 | 243.1.1.2 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 | 0.54 | 37.0 | 3.33e-01 | 71.8% | 95.0% |
| 4071075 | 1.1.8.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 | 0.54 | 46.0 | 4.36e-01 | 98.8% | 87.6% |
| 5061484 | 331.10.2.1 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › AdoMet_dc | 0.54 | 47.0 | 4.27e-01 | 98.8% | 88.6% |
| 3423528 | 708.1.1.1 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM | 0.54 | 46.0 | 3.78e-01 | 98.8% | 63.0% |
| 4391638 | 331.10.2.1 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › AdoMet_dc | 0.53 | 46.0 | 4.10e-01 | 98.8% | 80.8% |
| 3513469 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 38.0 | 3.25e-01 | 76.5% | 78.6% |
| 1568649 | 5.1.3.167 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR, BNR_2, BNR_3 | 0.53 | 40.0 | 2.55e-01 | 82.4% | 16.0% |
| 4478726 | 314.1.1.11 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta | 0.53 | 42.0 | 3.15e-01 | 88.2% | 76.1% |
| 3949006 | 5.1.2.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_43 | 0.52 | 42.0 | 2.95e-01 | 90.6% | 91.1% |
| 3278065 | 4312.1.1.4 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 | 0.52 | 38.0 | 3.56e-01 | 77.6% | 71.8% |
| 5058595 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.52 | 40.0 | 2.65e-01 | 80.0% | 84.9% |
| 4946841 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.52 | 38.0 | 3.47e-01 | 80.0% | 85.0% |
| 3416404 | 5.1.4.240 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MRJP | 0.52 | 37.0 | 2.48e-01 | 76.5% | 22.5% |
| 5019134 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.51 | 37.0 | 3.17e-01 | 77.6% | 70.0% |
| 5039455 | 223.1.1.27 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_10 | 0.51 | 37.0 | 3.40e-01 | 78.8% | 80.5% |
| 3739223 | 223.2.1.22 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Folliculin | 0.51 | 38.0 | 3.13e-01 | 80.0% | 66.7% |
| 3767654 | 2484.1.1.176 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hexokinase_1+Hexokinase_2 | 0.51 | 37.0 | 2.44e-01 | 81.2% | 88.8% |
| 3431418 | 9.2.1.4 ↗ | beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › DUF2921_N | 0.50 | 42.0 | 3.35e-01 | 95.3% | 70.0% |
| 3183932 | 5.1.2.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_32N | 0.50 | 36.0 | 2.44e-01 | 74.1% | 53.0% |
| 4226938 | 331.10.1.2 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › S-adenosylmethionine decarboxylase › AdoMet_dc | 0.50 | 43.0 | 3.26e-01 | 97.6% | 55.6% |