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sw_7_scaffold_1_prodigal-single.1__X__X__00348

Bact-Vir

sw_7_scaffold_1_prodigal-single.1__X__X__00348

Identity

Kingdom:
phage

Quality

70.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-70
PDB
D2 high residues 91-159
PDB
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ckkA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.82 58.0 6.29e-01 100.0% 89.5%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 57.0 5.89e-01 100.0% 89.4%
4f98A00 2.30.140.50 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Protein of unknown function DUF2790 0.64 41.0 4.32e-01 78.3% 72.6%
1u5kA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 42.0 4.04e-01 76.8% 57.3%
1lm4A00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.64 55.0 4.06e-01 98.6% 45.8%
1ci3M02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.63 41.0 4.36e-01 92.8% 77.6%
3htnB00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.63 54.0 4.25e-01 100.0% 46.0%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.63 43.0 4.38e-01 88.4% 73.1%
3k7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 53.0 4.65e-01 95.7% 94.4%
2hx0A01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.61 48.0 3.94e-01 100.0% 46.2%
1m1fB00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.61 53.0 4.64e-01 100.0% 75.2%
1u4dA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 41.0 3.95e-01 72.5% 95.2%
1jkfA03 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.60 39.0 4.15e-01 87.0% 76.7%
1reoA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 51.0 4.02e-01 95.7% 57.4%
3d2lA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.59 38.0 3.96e-01 92.8% 69.8%
1lomA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.59 34.0 3.07e-01 92.8% 38.6%
4kz1A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.59 48.0 3.98e-01 95.7% 91.1%
1fguB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 43.0 3.62e-01 79.7% 58.9%
7bwcA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.58 41.0 2.73e-01 78.3% 93.5%
1amiA04 3.20.19.10 Alpha Beta › Alpha-Beta Barrel › Aconitase; domain 4 › Aconitase, domain 4 0.56 46.0 3.33e-01 94.2% 81.0%
6cnhA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 35.0 3.38e-01 94.2% 53.8%
1y8tA03 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.56 45.0 4.24e-01 92.8% 80.7%
1gd5A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.55 38.0 3.11e-01 71.0% 73.8%
2xklA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 47.0 3.77e-01 100.0% 59.1%
1uliB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 44.0 3.41e-01 95.7% 79.1%
5yjwA00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.54 47.0 2.87e-01 100.0% 34.4%
4hh3A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 42.0 3.63e-01 87.0% 88.6%
1a31A03 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.53 44.0 3.54e-01 95.7% 54.7%
3f4lA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.53 41.0 2.99e-01 88.4% 93.3%
3n8bA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 35.0 3.47e-01 94.2% 62.7%
3hwuA00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.53 46.0 3.67e-01 100.0% 51.4%
6htnA01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.53 43.0 3.47e-01 91.3% 96.4%
2dt4A00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.52 44.0 3.60e-01 100.0% 51.0%
3qwmA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 43.0 3.59e-01 95.7% 57.5%
2gu1A01 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 41.0 3.87e-01 91.3% 81.8%
3u2aA00 3.30.450.310 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 40.0 3.49e-01 87.0% 72.3%
2y1sA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.52 43.0 3.77e-01 94.2% 77.8%
1gteA04 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 42.0 3.43e-01 98.6% 94.8%
1o97C00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.51 45.0 3.09e-01 100.0% 55.4%
5mteA00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.51 41.0 3.46e-01 95.7% 86.9%
1vqwA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 41.0 2.75e-01 95.7% 53.1%
3q48A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 3.90e-01 88.4% 94.0%
5icuA00 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 39.0 3.48e-01 85.5% 87.3%
4ffgA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.50 43.0 2.81e-01 97.1% 27.6%
3a58A01 2.30.29.90 Mainly Beta › Roll › PH-domain like › 0.50 42.0 3.24e-01 97.1% 47.7%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4377781 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.72 57.0 5.50e-01 100.0% 76.2%
4180654 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.69 54.0 4.29e-01 87.0% 62.1%
3999482 4.1.1.311 beta barrels › SH3 › SH3 › SH3 › BRWD_AD 0.68 61.0 5.21e-01 100.0% 78.2%
3959531 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 48.0 4.80e-01 100.0% 74.3%
3854465 283.2.1.8 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › PF29994 0.67 46.0 3.80e-01 71.0% 80.8%
3279044 2.1.1.314 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF27099 0.66 47.0 4.91e-01 75.4% 81.5%
3931053 4.25.1.2 beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD 0.66 58.0 5.18e-01 100.0% 90.0%
4625348 325.1.7.3 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C 0.65 42.0 4.47e-01 89.9% 76.7%
3383138 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 45.0 4.39e-01 78.3% 66.7%
3664617 2.1.1.223 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28721 0.63 46.0 4.26e-01 78.3% 62.4%
3654790 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 45.0 4.75e-01 79.7% 88.3%
3282644 2.24.1.2 beta barrels › OB-fold › probable receptor YhhM › probable receptor YhhM › DUF7489 0.62 42.0 4.39e-01 78.3% 75.4%
4502878 325.1.7.3 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C 0.62 42.0 4.40e-01 85.5% 80.0%
4492087 325.1.7.3 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C 0.62 41.0 4.26e-01 87.0% 73.8%
4129953 325.1.7.3 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C 0.61 41.0 4.25e-01 85.5% 73.8%
3371185 2.1.1.130 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.61 46.0 3.05e-01 82.6% 32.7%
3214812 2.1.1.76 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.61 44.0 4.03e-01 78.3% 60.6%
3540253 4.1.1.78 beta barrels › SH3 › SH3 › SH3 › TTD 0.60 47.0 4.33e-01 100.0% 64.2%
4931272 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.60 43.0 3.91e-01 76.8% 76.8%
3355345 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 42.0 4.27e-01 78.3% 74.3%
3202082 2003.1.3.9 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › FMO-like 0.60 50.0 2.98e-01 95.7% 61.1%
3393084 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.60 45.0 4.34e-01 100.0% 70.0%
3681185 2.1.1.130 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.60 43.0 2.96e-01 76.8% 23.3%
3772701 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.59 51.0 4.06e-01 95.7% 48.1%
4643742 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 50.0 4.73e-01 100.0% 77.6%
None 0.59 50.0 3.07e-01 95.7% 37.6%
3230301 2003.1.2.65 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like, Pyr_redox_3 0.58 48.0 2.93e-01 95.7% 65.1%
143390 2.24.1.1 beta barrels › OB-fold › probable receptor YhhM › probable receptor YhhM › DUF2500 0.58 40.0 3.92e-01 78.3% 67.1%
4040055 4.26.1.1 beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › Cren7 0.57 43.0 4.60e-01 92.8% 94.8%
4028996 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 49.0 3.87e-01 95.7% 49.0%
4077485 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.57 38.0 3.93e-01 85.5% 73.8%
4994410 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 44.0 4.15e-01 84.1% 91.8%
3386542 222.1.1.0 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.57 47.0 4.60e-01 91.3% 98.7%
4338151 220.1.1.87 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.57 49.0 3.90e-01 97.1% 56.6%
3337303 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 41.0 4.04e-01 78.3% 74.7%
3615163 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 45.0 3.97e-01 89.9% 80.4%
3980522 298.1.1.8 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C 0.55 41.0 2.92e-01 82.6% 92.7%
5077400 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.55 38.0 3.31e-01 71.0% 51.0%
3216916 220.1.1.23 beta barrels › PH domain-like › PH domain-like › PH domain-like › ICAP-1_inte_bdg 0.55 47.0 3.76e-01 100.0% 68.7%
4578663 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.54 39.0 3.94e-01 87.0% 75.7%
4089593 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.54 43.0 3.58e-01 88.4% 75.4%
3985126 520.1.1.0 beta sandwiches › gp9 N-terminal domain-like › gp9 N-terminal domain-related › gp9 N-terminal domain-related 0.54 41.0 3.94e-01 88.4% 71.2%
4207802 2.1.1.271 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF26390 0.54 41.0 3.74e-01 87.0% 86.0%
3589630 243.4.1.4 a+b two layers › Cystatin-like › DsbC/DsbG N-terminal domain-like › DsbC/DsbG N-terminal domain-like › DUF1292 0.54 46.0 4.19e-01 97.1% 71.1%
3843748 220.1.1.48 beta barrels › PH domain-like › PH domain-like › PH domain-like › Jak1_Phl 0.54 43.0 3.55e-01 91.3% 89.6%
3397928 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.54 43.0 3.62e-01 91.3% 95.2%
4031151 4056.1.1.0 beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.53 44.0 4.39e-01 98.6% 96.0%
4881988 220.1.1.19 beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.53 43.0 4.18e-01 92.8% 83.3%
4999777 2005.1.1.10 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ETF 0.52 46.0 3.12e-01 100.0% 52.7%
4929364 896.1.1.0 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.51 40.0 4.13e-01 92.8% 93.8%
3722114 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.51 40.0 3.23e-01 91.3% 91.0%
4345365 3414.1.1.3 beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein › Bact_surface_Ig-like 0.50 38.0 3.65e-01 87.0% 72.5%
3283166 325.1.6.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 0.50 40.0 2.78e-01 92.8% 24.4%
4963204 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.50 41.0 2.99e-01 88.4% 63.2%
3609111 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 43.0 3.42e-01 100.0% 66.0%