Back to structures

sw_7_scaffold_1_prodigal-single.1__X__X__00357

Bact-Vir

sw_7_scaffold_1_prodigal-single.1__X__X__00357

Identity

Kingdom:
phage

Quality

79.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-137
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.77 38.0 5.03e-01 91.2% 85.7%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.74 37.0 5.31e-01 92.6% 100.0%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 31.0 4.53e-01 87.5% 89.8%
2jngA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 35.0 4.54e-01 91.9% 81.8%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.70 25.0 4.19e-01 81.6% 95.7%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 36.0 4.78e-01 93.4% 98.6%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.67 37.0 3.63e-01 94.9% 49.0%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 32.0 4.07e-01 85.3% 80.3%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 34.0 4.24e-01 92.6% 82.1%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 30.0 4.35e-01 85.3% 100.0%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 30.0 3.81e-01 87.5% 80.8%
1wczA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 29.0 3.10e-01 91.9% 53.9%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 28.0 3.86e-01 85.3% 94.1%
2as9B01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 28.0 3.23e-01 97.1% 67.3%
1k1zA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 30.0 3.78e-01 97.1% 97.4%
1vw4M01 2.30.30.790 Mainly Beta › Roll › SH3 type barrels. › 0.51 39.0 4.04e-01 94.9% 82.6%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4069560 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.83 46.0 6.18e-01 93.4% 100.0%
3283097 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.78 42.0 4.68e-01 93.4% 66.4%
4625654 4.1.1.445 beta barrels › SH3 › SH3 › SH3 › Spore_GerQ 0.78 39.0 5.25e-01 91.2% 89.3%
4283343 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.74 44.0 5.67e-01 94.1% 100.0%
4083915 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.73 41.0 5.46e-01 96.3% 100.0%
4484974 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 42.0 5.27e-01 94.1% 91.8%
4596087 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.73 40.0 5.36e-01 91.9% 100.0%
3929373 4.1.1.233 beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.73 33.0 4.96e-01 90.4% 100.0%
4387099 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.72 42.0 5.49e-01 94.1% 100.0%
3821287 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.72 39.0 3.94e-01 92.6% 52.1%
4251101 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 43.0 5.40e-01 97.1% 97.6%
3344796 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.71 34.0 4.32e-01 90.4% 75.9%
3619619 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 33.0 4.46e-01 92.6% 87.1%
3587906 4.1.1.46 beta barrels › SH3 › SH3 › SH3 › VEG 0.68 36.0 4.66e-01 91.2% 88.7%
3185321 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.68 37.0 4.84e-01 92.6% 96.0%
2978978 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.67 36.0 4.63e-01 89.0% 92.0%
3806777 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.67 36.0 4.77e-01 91.2% 96.0%
3268160 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 44.0 5.31e-01 98.5% 100.0%
3240407 4.1.1.237 beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.66 34.0 4.61e-01 89.7% 95.7%
3841414 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.66 34.0 4.57e-01 94.9% 95.7%
3932484 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 32.0 4.53e-01 89.7% 98.4%
3924375 4.1.1.237 beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.66 34.0 4.47e-01 90.4% 90.7%
3941170 4.1.1.237 beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.65 33.0 4.48e-01 89.0% 94.3%
3669494 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.65 35.0 3.44e-01 91.2% 46.7%
5043132 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.65 39.0 4.93e-01 93.4% 96.5%
4987744 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.65 41.0 4.11e-01 100.0% 62.2%
165654 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.65 34.0 4.47e-01 92.6% 93.2%
4250193 4.1.1.78 beta barrels › SH3 › SH3 › SH3 › TTD 0.65 38.0 4.56e-01 96.3% 86.7%
3706101 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 42.0 3.55e-01 93.4% 42.9%
4988761 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.63 40.0 4.91e-01 94.1% 97.8%
5027789 4.1.1.30 beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.63 39.0 4.46e-01 90.4% 83.0%
3834112 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.62 36.0 4.64e-01 89.0% 100.0%
3342814 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.60 37.0 4.35e-01 91.9% 88.4%
4024240 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 32.0 4.02e-01 92.6% 87.5%
3959465 4.1.1.30 beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.58 39.0 4.01e-01 92.6% 71.5%
3626415 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.58 37.0 4.19e-01 100.0% 84.8%
4352127 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.57 28.0 2.27e-01 86.0% 24.1%
3409460 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 40.0 4.49e-01 100.0% 92.4%
4272564 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.57 39.0 4.39e-01 94.1% 88.9%
3719783 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 34.0 4.06e-01 94.1% 90.4%
3575581 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.55 39.0 3.66e-01 94.1% 60.6%
2755606 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.54 39.0 3.24e-01 94.9% 43.5%
3790897 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 38.0 4.35e-01 100.0% 99.0%
3702177 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 37.0 4.27e-01 93.4% 96.0%
3459099 4.1.1.158 beta barrels › SH3 › SH3 › SH3 › DUF3444 0.53 37.0 4.19e-01 94.1% 93.3%
4581369 4.1.1.166 beta barrels › SH3 › SH3 › SH3 › DUF2314 0.53 35.0 3.92e-01 92.6% 86.7%
3807651 4.1.1.158 beta barrels › SH3 › SH3 › SH3 › DUF3444 0.51 38.0 4.21e-01 94.1% 96.4%
3494307 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.51 34.0 3.51e-01 93.4% 72.0%
3590884 219.1.1.28 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.50 40.0 4.05e-01 97.8% 85.0%