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sw_7_scaffold_1_prodigal-single.1__X__X__00391
Bact-Virsw_7_scaffold_1_prodigal-single.1__X__X__00391
Identity
- Kingdom:
- phage
Quality
61.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-53
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4jfcA01 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.71 | 47.0 | 3.13e-01 | 100.0% | 17.9% |
| 3ho6B00 | 3.40.50.11050 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › MARTX cysteine protease (CPD) domain | 0.58 | 39.0 | 2.60e-01 | 71.7% | 48.0% |
| 2r40D00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.54 | 46.0 | 3.07e-01 | 100.0% | 30.5% |
| 4mouA01 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.53 | 46.0 | 3.11e-01 | 98.1% | 41.5% |
| 1zowA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.52 | 43.0 | 3.15e-01 | 94.3% | 34.5% |
| 1dqcA00 | 2.170.140.10 | Mainly Beta › Beta Complex › Antimicrobial Protein, Tachycitin; Chain A › Chitin binding domain | 0.52 | 37.0 | 3.43e-01 | 77.4% | 76.7% |
| 1k8iA01 | 3.10.320.10 | Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 | 0.52 | 44.0 | 3.93e-01 | 96.2% | 87.0% |
| 2o0aA00 | 3.40.850.20 | Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › | 0.50 | 42.0 | 2.74e-01 | 100.0% | 25.3% |
| 6l4lA02 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.50 | 41.0 | 3.15e-01 | 96.2% | 68.4% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4929702 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.68 | 46.0 | 4.72e-01 | 71.7% | 100.0% |
| 3205535 | 330.3.1.0 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like | 0.63 | 52.0 | 4.67e-01 | 96.2% | 70.5% |
| 3179779 | 330.3.1.0 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like | 0.63 | 52.0 | 4.47e-01 | 98.1% | 61.1% |
| 4474519 | 330.3.1.0 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like | 0.61 | 49.0 | 4.76e-01 | 92.5% | 85.0% |
| 4275625 | 375.1.1.47 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › BshC | 0.60 | 46.0 | 4.50e-01 | 84.9% | 98.3% |
| 4261546 | 330.3.1.0 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like | 0.59 | 47.0 | 4.36e-01 | 92.5% | 71.2% |
| 3691998 | 386.1.1.18 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_jaz | 0.59 | 45.0 | 4.31e-01 | 90.6% | 80.0% |
| 3598119 | 330.3.1.0 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like | 0.58 | 48.0 | 4.44e-01 | 98.1% | 71.4% |
| 3819232 | 330.3.1.0 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like | 0.56 | 43.0 | 4.41e-01 | 96.2% | 98.0% |
| 3485364 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.56 | 38.0 | 3.92e-01 | 88.7% | 80.0% |
| 3260511 | 386.1.1.71 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › SURF2 | 0.55 | 40.0 | 4.06e-01 | 84.9% | 83.6% |
| 5060491 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.54 | 44.0 | 3.37e-01 | 88.7% | 39.2% |
| 4507628 | 330.3.1.0 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like | 0.54 | 39.0 | 4.06e-01 | 83.0% | 100.0% |
| 4028249 | 330.3.1.0 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like | 0.54 | 38.0 | 3.79e-01 | 75.5% | 75.9% |
| 3481637 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.54 | 36.0 | 3.65e-01 | 75.5% | 71.7% |
| 3537939 | 386.1.1.316 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF30902 | 0.54 | 37.0 | 3.88e-01 | 73.6% | 97.8% |
| 3658440 | 386.1.1.26 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_6 | 0.54 | 38.0 | 3.82e-01 | 79.2% | 74.5% |
| 3602640 | 2004.1.1.120 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ResIII | 0.54 | 46.0 | 2.97e-01 | 100.0% | 73.6% |
| 3965485 | 5084.5.3.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel | 0.53 | 44.0 | 2.53e-01 | 98.1% | 8.5% |
| 3716634 | 109.4.1.1357 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2, TPR_16 | 0.53 | 40.0 | 2.56e-01 | 92.5% | 14.3% |
| 4962043 | 386.1.1.422 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF26266 | 0.52 | 36.0 | 3.68e-01 | 86.8% | 78.2% |
| 3604231 | 386.1.1.126 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_7th_ZNF462 | 0.52 | 40.0 | 4.00e-01 | 94.3% | 89.1% |
| 3526146 | 386.1.1.1 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 | 0.52 | 34.0 | 3.58e-01 | 86.8% | 84.4% |
| 3397452 | 386.1.1.4 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED | 0.51 | 38.0 | 3.77e-01 | 86.8% | 80.0% |
| 3481222 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.51 | 35.0 | 2.97e-01 | 71.7% | 71.1% |