tegument_protein_UL88

Euk-Vir

Equid_gammaherpesvirus_2

tegument_protein_UL88__NP_042619__Equid_gammaherpesvirus_2__12657

Identity

79.2 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Percavirus› Equid_gammaherpesvirus_2

TaxID: 12657

View cluster (15 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-144

PDB

Domain cluster: rep: tegument_protein_UL88__YP_002608280__Human_herpesvirus_5__10359__D21-114_139-191

D2 high residues 317-414

PDB

Domain cluster: rep: ORF23__YP_009042002__Bovine_gammaherpesvirus_6__1504288__D308-400

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04682.18 best	Herpes_BTRF1	151.0	5.90e-44	100.0%	37.8%

D3 medium residues 211-282

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04682.18 best	Herpes_BTRF1	103.2	2.30e-29	100.0%	27.0%

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
8h6qD01	1.10.600.10	Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase	0.55	42.0	2.81e-01	97.2%	19.9%
5zzjA02	1.10.600.10	Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase	0.53	45.0	3.03e-01	100.0%	46.7%
3mq1A01	1.20.58.970	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.52	36.0	3.37e-01	100.0%	56.5%
7o62B01	3.40.50.450	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.52	34.0	2.77e-01	79.2%	36.4%
3ftdA02	1.10.8.100	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain	0.51	36.0	3.85e-01	90.3%	87.3%
4gc5A02	1.10.8.100	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain	0.51	41.0	3.86e-01	90.3%	85.6%
1zq9A02	1.10.8.480	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 ›	0.51	40.0	3.74e-01	91.7%	94.9%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3866248	4163.1.1.5 ↗	alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Use1	0.58	37.0	3.79e-01	98.6%	67.1%
3735912	109.4.1.317 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Med5	0.54	39.0	2.66e-01	79.2%	60.0%
3906701	109.4.1.414 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MMS19_N	0.51	38.0	2.53e-01	83.3%	38.9%