tegument_protein_UL88

Euk-Vir

Human_herpesvirus_5

tegument_protein_UL88__YP_002608280__Human_herpesvirus_5__10359

Identity

71.9 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Cytomegalovirus› Human_betaherpesvirus_5

TaxID: 10359

View cluster (21 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 21-114_139-191

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04529.18 best	Herpes_U59	234.4	3.20e-69	100.0%	41.1%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
7v6bA01	3.30.160.380	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Dicer dimerisation domain	0.53	25.0	2.81e-01	76.2%	54.4%
5dm6S02	2.170.120.20	Mainly Beta › Beta Complex › RNA Polymerase Alpha Subunit; Chain A, domain 2 › Ribosomal protein L25, C-terminal domain	0.52	29.0	3.49e-01	93.9%	86.5%
3tzyA02	3.30.70.250	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding	0.50	25.0	3.38e-01	93.9%	97.1%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3690571	4317.1.1.0 ↗	a+b duplicates or obligate multimers › YdfO-like › YdfO-like › YdfO-like	0.56	28.0	3.44e-01	81.6%	77.6%
4052358	325.1.7.0 ↗	a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif	0.52	25.0	3.40e-01	85.0%	92.9%
4994238	316.1.1.18 ↗	a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › AbiEii	0.51	36.0	2.75e-01	73.5%	81.6%
3737707	7080.1.1.0 ↗	beta sandwiches › SARAF luminal domain › SARAF luminal domain › SARAF luminal domain	0.50	29.0	3.38e-01	97.3%	79.0%

D2 high residues 213-325

PDB

Domain cluster: rep: hypothetical_protein_MRV_0079__YP_009344906__Murine_roseolovirus__1940555__D154-242

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04529.18 best	Herpes_U59	134.2	9.00e-39	100.0%	29.9%

D3 high residues 330-428

PDB

Domain cluster: rep: E88__YP_007016485__Murid_betaherpesvirus_8__1261657__D330-411

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04529.18 best	Herpes_U59	93.7	1.80e-26	100.0%	25.5%

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4xviA01	1.10.150.20	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain	0.56	37.0	3.34e-01	70.7%	46.5%
3ay5A01	1.20.1420.10	Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain	0.55	33.0	3.01e-01	81.8%	43.6%
1q2wA03	1.10.1840.10	Mainly Alpha › Orthogonal Bundle › main proteinase (3clpro) structure, domain 3 › main proteinase (3clpro) structure, domain 3	0.54	44.0	4.36e-01	90.9%	92.3%
1m12A00	1.10.225.10	Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like	0.53	38.0	4.08e-01	77.8%	88.1%
1txgA02	1.10.1040.10	Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	0.51	42.0	3.71e-01	91.9%	91.6%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3429258	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.62	34.0	3.63e-01	84.8%	60.0%
3650365	101.1.10.0 ↗	alpha arrays › HTH › HTH › Cyclin-like	0.55	39.0	4.00e-01	75.8%	94.7%
5035252	140.1.1.14 ↗	alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1e	0.53	35.0	2.71e-01	83.8%	28.9%
3891338	4156.1.1.2 ↗	alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_N,HA2_C	0.53	38.0	2.94e-01	75.8%	60.4%