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tegument_protein_UL88

Euk-Vir

Aotine_betaherpesvirus_1

tegument_protein_UL88__YP_004940105__Aotine_betaherpesvirus_1__50290

Identity

Accession:
YP_004940105 ↗
Protein ID:
tegument_protein_UL88
Kingdom:
euk

Quality

85.2 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Cytomegalovirus› Aotine_betaherpesvirus_1

TaxID: 50290

Cluster

View cluster (21 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-163
PDB
Domain cluster: rep: tegument_protein_UL88__YP_002608280__Human_herpesvirus_5__10359__D21-114_139-191
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04529.18 best Herpes_U59 183.1 1.20e-53 99.4% 41.6%
D2 high residues 190-285
PDB
Domain cluster: rep: hypothetical_protein_MRV_0079__YP_009344906__Murine_roseolovirus__1940555__D154-242
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04529.18 best Herpes_U59 108.8 4.70e-31 99.0% 26.0%
D3 high residues 293-379
PDB
Domain cluster: rep: E88__YP_007016485__Murid_betaherpesvirus_8__1261657__D330-411
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04529.18 best Herpes_U59 76.0 4.30e-21 100.0% 23.8%
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1bhpA00 3.30.1350.10 Alpha Beta › 2-Layer Sandwich › Crambin › Thionin-like 0.68 31.0 4.13e-01 89.7% 82.2%
1crnA00 3.30.1350.10 Alpha Beta › 2-Layer Sandwich › Crambin › Thionin-like 0.67 31.0 4.09e-01 89.7% 82.6%
3b89A01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.65 35.0 4.30e-01 80.5% 83.3%
3qwlA02 1.10.8.680 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ypt/Rab-GAP domain of gyp1p, domain 2 0.65 37.0 3.95e-01 79.3% 63.6%
6rxaA01 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.58 40.0 4.09e-01 73.6% 85.1%
1c9bA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.57 43.0 4.18e-01 80.5% 93.8%
4rayA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 42.0 4.25e-01 81.6% 98.8%
7dkaA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 46.0 3.50e-01 100.0% 40.5%
4xviA01 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.55 39.0 3.41e-01 78.2% 46.5%
1uaaA02 1.10.10.160 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.54 39.0 4.14e-01 78.2% 87.8%
1a41A02 1.20.120.380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 0.54 38.0 3.71e-01 73.6% 92.6%
2e1qC02 1.10.150.120 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › [2Fe-2S]-binding domain 0.53 39.0 3.75e-01 78.2% 78.4%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.53 40.0 3.93e-01 82.8% 84.5%
3eyyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 36.0 3.69e-01 73.6% 98.8%
3sqiA01 1.10.150.540 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.52 36.0 3.48e-01 72.4% 76.8%
2jswA00 1.20.1410.10 Mainly Alpha › Up-down Bundle › I/LWEQ domain › I/LWEQ domain 0.51 37.0 2.99e-01 79.3% 82.5%
4hhxA00 1.20.81.30 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F 0.50 39.0 3.70e-01 82.8% 85.6%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4388170 103.1.1.6 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.62 35.0 4.03e-01 80.5% 78.3%
4040783 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.62 32.0 3.83e-01 79.3% 76.4%
4352373 141.1.1.2 ↗ alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › SQS_PSY 0.61 44.0 3.14e-01 78.2% 92.9%
3793383 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.60 40.0 4.48e-01 74.7% 92.3%
4401012 103.1.1.6 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.60 32.0 3.70e-01 80.5% 73.3%
167309 592.2.1.3 ↗ alpha arrays › PWI domain-like › YugE-like › YugE-like › Nab2 0.59 43.0 4.05e-01 75.9% 70.5%
3930155 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 45.0 4.18e-01 80.5% 73.6%
3001792 4964.1.1.0 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.59 43.0 3.96e-01 78.2% 60.2%
3998882 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.59 42.0 4.30e-01 75.9% 77.6%
3474514 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.58 41.0 3.93e-01 75.9% 97.1%
3526452 213.1.1.88 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › PCAF_N 0.57 40.0 3.38e-01 73.6% 94.2%
3770692 3345.1.1.2 ↗ alpha arrays › MRG domain › MRG domain › MRG domain › PCAF_N 0.57 40.0 3.38e-01 73.6% 94.2%
4975020 4964.1.1.0 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.57 41.0 3.66e-01 78.2% 68.9%
3800176 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.57 40.0 4.05e-01 74.7% 76.5%
4928237 131.1.1.0 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like 0.56 41.0 3.34e-01 77.0% 65.3%
3992442 592.7.1.1 ↗ alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain › GIPC1_GH2 0.56 42.0 4.28e-01 82.8% 91.8%
4238441 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.55 39.0 4.07e-01 85.1% 81.2%
3179467 4156.1.1.4 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_C 0.53 40.0 3.06e-01 82.8% 67.9%
3333209 148.1.3.1 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › NB-ARC 0.52 29.0 2.56e-01 82.8% 32.3%
3260056 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.52 39.0 3.81e-01 83.9% 93.0%
4164573 5060.2.1.1 ↗ alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.52 41.0 3.71e-01 82.8% 77.4%
4938031 7512.1.1.30 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.51 44.0 3.48e-01 100.0% 69.7%
3694974 206.1.1.48 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › FTA2 0.50 39.0 2.77e-01 85.1% 41.9%