tegument_protein_UL88

Euk-Vir

Saimiriine_betaherpesvirus_4

tegument_protein_UL88__YP_004940251__Saimiriine_betaherpesvirus_4__1535247

Identity

85.9 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Cytomegalovirus› Saimiriine_betaherpesvirus_4

TaxID: 1535247

View cluster (21 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-162

PDB

Domain cluster: rep: tegument_protein_UL88__YP_002608280__Human_herpesvirus_5__10359__D21-114_139-191

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04529.18 best	Herpes_U59	169.3	1.90e-49	99.4%	41.9%

D2 medium residues 166-378

PDB

Domain cluster: rep: tegument_protein_UL88__YP_007969786__Elephantid_betaherpesvirus_1__146015__D138-346

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04529.18 best	Herpes_U59	198.6	2.40e-58	100.0%	56.4%

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4nooB00	1.10.8.1160	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 ›	0.57	25.0	3.79e-01	92.5%	94.7%
2pv4A00	1.10.3440.10	Mainly Alpha › Orthogonal Bundle › Sama2622-like fold › Sama2622-like	0.55	28.0	3.35e-01	100.0%	69.7%
5z7cA01	1.10.3210.10	Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432	0.52	24.0	2.67e-01	97.2%	50.6%
5iduA01	1.10.540.10	Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain	0.51	28.0	3.62e-01	91.1%	92.5%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3932592	101.1.10.0 ↗	alpha arrays › HTH › HTH › Cyclin-like	0.52	31.0	3.80e-01	73.7%	91.1%