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tegument_protein_VP11_12

Euk-Vir

Gallid_alphaherpesvirus_3

tegument_protein_VP11_12__NP_066878__Gallid_alphaherpesvirus_3__35250

Identity

Accession:: NP_066878 ↗
Protein ID:: tegument_protein_VP11_12
Kingdom:: euk

Quality

66.0 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Mardivirus› Gallid_alphaherpesvirus_3

TaxID: 35250

Cluster

View cluster (32 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 54-401

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03387.19 best	Herpes_UL46	333.2	3.10e-99	100.0%	79.8%

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3lssA01	1.10.287.40	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain	0.81	19.0	3.61e-01	77.6%	66.1%
1w07A03	1.20.140.10	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3	0.64	24.0	3.40e-01	87.1%	68.5%
1wnvB00	1.20.910.10	Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like	0.59	32.0	3.95e-01	74.4%	82.4%
3r2kA00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.56	24.0	3.45e-01	88.5%	83.1%
1wp9B03	1.20.1320.20	Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › hef helicase domain	0.55	22.0	3.51e-01	95.7%	94.6%
3gehA02	1.20.120.430	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › tRNA modification GTPase MnmE domain 2	0.55	27.0	3.67e-01	92.2%	91.0%
1a22A00	1.20.1250.10	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; ›	0.54	27.0	3.62e-01	73.3%	87.8%
3am6A00	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.53	30.0	3.58e-01	77.6%	79.5%
4gycA00	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.53	29.0	3.58e-01	77.3%	81.8%
3v5uA02	1.20.1420.30	Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › NCX, central ion-binding region	0.52	31.0	3.84e-01	86.8%	91.0%
3mpxA01	1.20.900.10	Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain	0.51	31.0	3.88e-01	96.0%	98.5%
4gyvE00	1.20.900.10	Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain	0.50	31.0	3.85e-01	92.8%	97.2%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3713780	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.77	23.0	4.11e-01	85.3%	78.4%
3264751	4044.1.1.0 ↗	alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins	0.61	23.0	3.50e-01	73.3%	79.3%
3810024	633.22.1.0 ↗	alpha bundles › Bromodomain-like › Vitamin K epoxide reductase (VKOR) › Vitamin K epoxide reductase (VKOR)	0.56	28.0	3.81e-01	89.7%	91.8%
4946169	7064.1.1.0 ↗	alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1	0.51	29.0	3.71e-01	85.9%	93.6%
3906315	3914.1.1.1 ↗	alpha bundles › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › Anoctamin	0.51	35.0	2.87e-01	96.8%	37.3%
3699574	3914.1.1.7 ↗	alpha bundles › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › RSN1_7TM	0.50	34.0	2.94e-01	96.8%	43.2%
4565985	5051.1.1.3 ↗	alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › SSF	0.50	36.0	3.19e-01	70.4%	77.3%