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tegument_protein_VP11_12

Euk-Vir

Cercopithecine_alphaherpesvirus_9

tegument_protein_VP11_12__NP_077427__Cercopithecine_alphaherpesvirus_9__35246

Identity

Accession:: NP_077427 ↗
Protein ID:: tegument_protein_VP11_12
Kingdom:: euk

Quality

66.3 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Varicellovirus› Cercopithecine_alphaherpesvirus_9

TaxID: 35246

Cluster

View cluster (32 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 62-99_394-438

PDB

Domain cluster: representative

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03387.19 best	Herpes_UL46	38.9	6.50e-10	55.4%	9.7%
PF03387.19	Herpes_UL46	28.3	1.10e-06	51.8%	9.7%

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1fs0G02	1.10.287.80	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain	0.66	40.0	3.93e-01	83.1%	57.3%
3cb2A03	1.10.287.600	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin	0.63	36.0	4.16e-01	83.1%	78.7%
3layF00	1.20.120.1490	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.59	36.0	3.73e-01	83.1%	64.1%
3fppA03	6.10.140.1990	Special › Helix non-globular › Helix Hairpins ›	0.57	36.0	3.55e-01	83.1%	60.2%
1zkeA00	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.57	38.0	3.92e-01	83.1%	71.6%
4h63H01	1.20.58.1710	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.55	34.0	3.70e-01	83.1%	73.6%
2ic6A00	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.54	35.0	3.78e-01	83.1%	77.5%
4nsmA00	6.10.250.2770	Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.54	36.0	3.88e-01	83.1%	80.3%
2bduA02	1.10.150.340	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Pyrimidine 5'-nucleotidase (UMPH-1), N-terminal domain	0.52	30.0	3.17e-01	81.9%	62.2%
3zbhA00	1.10.287.1060	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like	0.52	36.0	3.53e-01	84.3%	66.7%
3favD00	1.10.287.1060	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like	0.51	36.0	3.70e-01	84.3%	76.9%
3icxA01	1.10.287.660	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin	0.51	35.0	3.66e-01	83.1%	80.0%
3eabE00	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.50	30.0	3.05e-01	83.1%	58.1%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4979047	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.63	39.0	3.08e-01	84.3%	32.1%
3277932	150.5.1.52 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › PE	0.60	35.0	3.42e-01	83.1%	53.3%
4303085	3755.3.1.467 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DRC7_C	0.58	38.0	3.33e-01	84.3%	46.7%
3219593	150.5.1.0 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like	0.53	32.0	3.50e-01	83.1%	75.4%
3702706	192.15.1.0 ↗	alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains	0.53	39.0	3.98e-01	84.3%	80.0%
3717072	3567.1.1.0 ↗	a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer	0.52	34.0	2.82e-01	83.1%	37.9%

D2 medium residues 174-226_323-393

PDB

Domain cluster: representative

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03387.19 best	Herpes_UL46	102.2	4.20e-29	59.7%	16.3%
PF03387.19	Herpes_UL46	53.5	2.50e-14	44.4%	11.9%

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1dowA00	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.61	44.0	3.69e-01	73.4%	100.0%
3lnrA00	1.20.120.1530	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.58	39.0	3.57e-01	76.6%	52.5%
1b5lA00	1.20.1250.10	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; ›	0.56	39.0	3.64e-01	75.0%	58.6%
8f7aA01	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.55	50.0	3.05e-01	95.2%	21.1%
4etrB00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.54	38.0	3.83e-01	87.1%	72.1%
3anwB00	1.20.58.2050	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.52	37.0	3.40e-01	72.6%	62.3%
2qkdA04	2.60.120.1040	Mainly Beta › Sandwich › Jelly Rolls › ZPR1, A/B domain	0.51	32.0	3.23e-01	96.0%	61.4%

ECOD (18)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4025236	192.29.1.171 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Sas10_Utp3	0.68	46.0	4.51e-01	99.2%	63.0%
3598858	5001.1.1.0 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like	0.61	46.0	3.33e-01	78.2%	84.0%
3245304	5001.1.1.1 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1	0.61	50.0	3.58e-01	87.9%	65.3%
4499294	4006.1.1.1 ↗	alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF	0.59	41.0	4.29e-01	97.6%	80.0%
3692455	633.6.1.8 ↗	alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › ACOX_C_alpha1	0.58	43.0	3.70e-01	78.2%	78.0%
3871961	5001.1.1.43 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › V1R	0.58	43.0	3.22e-01	77.4%	47.3%
4097040	4006.1.1.1 ↗	alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF	0.57	39.0	4.31e-01	99.2%	89.0%
4681786	4006.1.1.1 ↗	alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF	0.56	40.0	4.25e-01	99.2%	86.7%
4017860	109.4.1.356 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans	0.56	50.0	3.30e-01	100.0%	93.5%
3516641	3755.3.1.0 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin	0.55	34.0	3.15e-01	77.4%	48.1%
2443879	507.1.1.2 ↗	alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaG_DnaB_bind	0.55	48.0	4.62e-01	93.5%	96.4%
4074458	4006.1.1.1 ↗	alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF	0.55	39.0	4.30e-01	99.2%	94.0%
4044992	4006.1.1.1 ↗	alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF	0.54	40.0	4.32e-01	100.0%	91.4%
3392417	5051.1.1.6 ↗	alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Aa_trans	0.54	48.0	3.38e-01	100.0%	73.1%
3412240	174.1.1.33 ↗	few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Erg28	0.54	40.0	3.95e-01	77.4%	89.2%
5033487	601.1.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin	0.53	40.0	3.78e-01	80.6%	86.7%
4026902	109.4.1.22 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N	0.50	41.0	3.90e-01	86.3%	93.8%
4560899	109.4.1.1429 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Med12, Med12-LCEWAV	0.50	41.0	3.15e-01	88.7%	66.3%