←Back to structures
tegument_protein_VP11_12
Euk-VirGallid_alphaherpesvirus_2
tegument_protein_VP11_12__YP_001033975__Gallid_alphaherpesvirus_2__10390
Identity
- Accession:
- YP_001033975 ↗
- Protein ID:
- tegument_protein_VP11_12
- Kingdom:
- euk
Quality
68.5
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Mardivirus›
Gallid_alphaherpesvirus_2
TaxID: 10390
Cluster
View cluster (32 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 69-163_177-191
Domain cluster:
rep: tegument_protein_VP11_12__YP_010087561__Cervid_alphaherpesvirus_3__2115790__D61-157_362-374
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03387.19 best | Herpes_UL46 | 136.2 | 1.90e-39 | 100.0% | 28.3% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4egwA02 | 1.20.58.340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region | 0.55 | 33.0 | 3.23e-01 | 90.9% | 52.9% |
| 3qo8A01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.53 | 32.0 | 3.29e-01 | 93.6% | 59.4% |
| 2dq0A01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.52 | 32.0 | 3.26e-01 | 94.5% | 60.7% |
| 3hr0B01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.52 | 33.0 | 3.72e-01 | 93.6% | 88.6% |
| 5nl6A02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 32.0 | 3.25e-01 | 94.5% | 62.0% |
| 3ooqA02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.51 | 40.0 | 3.01e-01 | 84.5% | 96.6% |
| 4gkfA00 | 1.10.520.30 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain | 0.50 | 37.0 | 3.36e-01 | 78.2% | 57.5% |
| 1vmgA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.50 | 33.0 | 3.73e-01 | 76.4% | 89.0% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3597454 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 34.0 | 3.30e-01 | 87.3% | 51.5% |
| 3739242 | 3291.1.1.1 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7 | 0.53 | 32.0 | 2.83e-01 | 93.6% | 38.8% |
| 3802084 | 6155.1.1.14 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › Rer1 | 0.51 | 28.0 | 2.88e-01 | 91.8% | 52.4% |
| 3883431 | 3777.1.1.0 ↗ | alpha bundles › Prolyl 4-hydroxylase alpha subunit dimerization domain › Prolyl 4-hydroxylase alpha subunit dimerization domain › Prolyl 4-hydroxylase alpha subunit dimerization domain | 0.50 | 30.0 | 3.13e-01 | 90.9% | 62.0% |
D2
medium
residues 164-176_199-359
Domain cluster:
rep: tegument_protein_VP11_12__YP_009011033__Chimpanzee_herpesvirus_strain_105640__332937__D222-382
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03387.19 best | Herpes_UL46 | 260.8 | 3.10e-77 | 97.7% | 38.6% |