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tegument_protein_VP13_14

Euk-Vir

Gallid_alphaherpesvirus_3

tegument_protein_VP13_14__NP_066879__Gallid_alphaherpesvirus_3__35250

Identity

Accession:
NP_066879 ↗
Protein ID:
tegument_protein_VP13_14
Kingdom:
euk

Quality

59.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 383-431_722-765
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF03362.19 best Herpes_UL47 42.5 5.70e-11 52.7% 10.3%
PF03362.19 Herpes_UL47 40.3 2.60e-10 51.6% 9.5%
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2p0lA00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.53 44.0 3.25e-01 93.5% 96.2%
3bosB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 35.0 2.93e-01 95.7% 39.5%
7pcrA01 3.40.50.10710 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Metallo-hydrolase/oxidoreductase 0.52 30.0 2.55e-01 95.7% 35.3%
1yozA00 1.10.3200.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › AF0941-like 0.51 41.0 3.83e-01 84.9% 96.5%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3482274 142.1.1.5 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › SRI 0.53 38.0 3.42e-01 75.3% 55.4%
3834310 2484.1.1.67 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.50 36.0 3.11e-01 75.3% 80.7%
D2 medium residues 432-512
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03362.19 best Herpes_UL47 40.3 2.50e-10 97.5% 19.8%
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8gccA03 1.10.268.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 0.59 44.0 4.05e-01 79.0% 84.6%
7b7tA01 1.20.1270.30 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.58 41.0 3.30e-01 74.1% 68.3%
3okqA00 1.20.58.1540 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Actin interacting protein 3, C-terminal domain 0.52 37.0 3.21e-01 74.1% 64.0%
2fzlA02 6.10.140.1180 Special › Helix non-globular › Helix Hairpins › 0.51 36.0 4.13e-01 75.3% 96.8%
4h63H01 1.20.58.1710 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 36.0 3.85e-01 74.1% 95.8%
2rh8A00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.50 37.0 2.59e-01 81.5% 58.7%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3251599 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 35.0 3.67e-01 100.0% 68.0%
3391384 5030.1.1.0 extended segments › Photosystem II reaction center protein L, PsbL › Photosystem II reaction center protein L, PsbL › Photosystem II reaction center protein L, PsbL 0.53 40.0 3.96e-01 79.0% 96.5%
3245731 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.52 37.0 3.76e-01 91.4% 73.8%
4834692 5069.1.1.6 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › COX15-CtaA 0.52 43.0 3.62e-01 87.7% 99.2%
3629045 601.2.1.5 alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes › Ctr 0.52 40.0 3.53e-01 85.2% 75.2%
3780136 604.3.1.11 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › DUF155 0.51 39.0 3.49e-01 81.5% 80.9%
D3 medium residues 513-579_604-640_687-721
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03362.19 best Herpes_UL47 42.7 5.00e-11 78.4% 23.8%
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4rngC00 1.20.1280.290 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.69 41.0 5.20e-01 87.1% 100.0%
1m56C02 1.20.120.80 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle 0.66 53.0 4.71e-01 84.2% 95.9%
3zciA00 1.20.58.1660 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 47.0 4.24e-01 74.8% 82.7%
2ntxA01 1.20.58.2010 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › PRONE domain, subdomain 1 0.60 43.0 3.73e-01 72.7% 68.6%
3wmeA01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.58 42.0 3.26e-01 75.5% 54.9%
1s0pA01 1.25.40.330 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Adenylate cyclase-associated CAP, N-terminal domain 0.57 41.0 3.85e-01 74.8% 86.0%
1t72A02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.57 38.0 4.47e-01 87.8% 98.0%
1aepA00 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.57 37.0 3.62e-01 85.6% 60.1%
5awwY00 1.10.3370.10 Mainly Alpha › Orthogonal Bundle › Preprotein translocase SecY subunit › SecY subunit domain 0.56 41.0 2.91e-01 76.3% 54.2%
1sumB02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.55 41.0 4.41e-01 92.1% 90.7%
1xg2B00 1.20.140.40 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein 0.55 40.0 3.92e-01 74.8% 90.7%
3fnrA01 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.55 38.0 3.83e-01 71.9% 77.9%
1fnnB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 39.0 4.44e-01 78.4% 100.0%
4k7bA00 1.20.120.1740 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Sodium ion translocating NADH-quinone reductase subunit C-like 0.54 30.0 3.31e-01 86.3% 65.8%
6jpaE00 1.20.140.150 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.54 39.0 3.69e-01 74.8% 82.2%
5nl6B01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 40.0 4.34e-01 87.8% 90.1%
1wcrA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.53 37.0 4.23e-01 87.8% 97.1%
1ileA03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.53 42.0 3.81e-01 83.5% 74.3%
6d2qA02 1.20.80.10 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.52 29.0 3.29e-01 88.5% 70.2%
4q5nA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.52 39.0 4.28e-01 97.8% 98.2%
1dn1B00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 47.0 4.06e-01 100.0% 91.0%
2wzkA03 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.52 35.0 3.90e-01 91.4% 87.3%
1hciA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 39.0 4.06e-01 87.8% 85.7%
4gc0A02 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.51 36.0 3.11e-01 72.7% 84.5%
4hdoA02 1.20.80.10 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.50 31.0 3.30e-01 88.5% 69.7%
6p73A02 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.50 34.0 3.38e-01 70.5% 65.7%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3836003 3684.1.1.2 alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › BPS1 0.75 61.0 5.28e-01 85.6% 92.2%
3439705 3758.1.1.7 alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins › BPS1 0.71 58.0 4.96e-01 87.1% 92.3%
4928241 604.5.1.2 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU 0.61 44.0 4.13e-01 74.8% 59.4%
3610921 604.5.1.36 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › UPF0220 0.60 43.0 4.49e-01 74.8% 87.7%
5065913 604.5.1.2 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU 0.60 44.0 3.79e-01 75.5% 61.9%
3670152 5069.1.3.24 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › TIC20 0.56 39.0 3.93e-01 90.6% 68.3%
4456477 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.56 46.0 4.28e-01 87.8% 100.0%
4980796 5059.1.1.1 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.56 36.0 3.61e-01 84.9% 63.6%
3195266 5050.1.1.11 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › UNC-93 0.54 38.0 3.32e-01 71.9% 89.3%
4983939 5059.1.1.1 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.54 36.0 3.59e-01 85.6% 64.1%
5064617 5059.1.1.1 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.54 38.0 3.81e-01 92.8% 71.4%
5037184 5082.1.1.1 alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux 0.53 36.0 3.21e-01 87.1% 47.0%
3998961 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.53 40.0 3.57e-01 78.4% 73.3%
4102147 1075.1.2.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX 0.53 43.0 3.79e-01 87.1% 72.2%
3653751 5058.1.1.11 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › TerC 0.52 46.0 3.88e-01 95.0% 94.8%
3228505 5059.1.1.34 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA, Nuc_sug_transp 0.52 40.0 3.06e-01 79.1% 61.6%
2329732 3718.1.1.1 alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT › FliT 0.52 34.0 3.45e-01 79.9% 63.2%
4008609 1203.1.2.7 alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 › GNVR 0.52 42.0 4.20e-01 95.0% 84.3%
3974229 5059.1.1.1 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.52 45.0 3.65e-01 97.8% 77.5%
3677795 5050.1.1.26 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › UVB_sens_prot 0.51 39.0 3.21e-01 80.6% 90.4%
4394631 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.51 43.0 3.43e-01 90.6% 85.0%
4928380 140.1.1.5 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon_1 0.51 44.0 3.50e-01 93.5% 86.1%
3604134 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.51 40.0 3.69e-01 82.0% 78.9%
5071393 5059.1.1.1 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.51 37.0 3.64e-01 92.8% 70.0%
3523907 604.1.1.92 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › SR_desmoplakin_3 0.50 38.0 3.97e-01 86.3% 86.4%
4967067 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.50 36.0 3.87e-01 93.5% 88.7%
3907729 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.50 37.0 3.21e-01 77.7% 96.0%
3942023 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.50 43.0 3.42e-01 92.8% 84.6%
D4 medium residues 580-603_641-686_784-804
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3n5lA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.79 45.0 5.76e-01 73.6% 93.0%
4ciuA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.70 51.0 3.98e-01 75.8% 91.1%
4dwlA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.68 48.0 4.52e-01 72.5% 67.6%
1vx7301 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.64 45.0 4.97e-01 71.4% 87.8%
3buxB01 1.20.930.20 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Adaptor protein Cbl, N-terminal domain 0.57 47.0 4.12e-01 86.8% 80.6%
3if8B02 1.20.58.730 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 35.0 3.42e-01 76.9% 61.0%
4m0mA04 1.20.1270.440 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.50 43.0 3.98e-01 95.6% 76.1%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3575178 616.1.1.30 alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › Neur_chan_memb 0.74 46.0 5.10e-01 72.5% 77.3%
3556887 3758.1.1.66 alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins › TMEM120A-B 0.67 47.0 4.71e-01 73.6% 73.7%
4233792 9001.1.1.3 alpha bundles › TMEM120/ELO/TLC › TMEM120/ELO/TLC › TMEM120/ELO/TLC › TMPIT 0.66 47.0 4.28e-01 73.6% 61.7%
3972755 601.1.2.99 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › DAGK_prokar 0.66 48.0 4.35e-01 74.7% 78.0%
3944240 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.62 47.0 4.75e-01 78.0% 95.6%
3626229 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.59 49.0 5.11e-01 86.8% 96.5%