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tegument_protein_VP13_14
Euk-VirEquid_alphaherpesvirus_9
tegument_protein_VP13_14__YP_002333494__Equid_alphaherpesvirus_9__55744
Identity
- Accession:
- YP_002333494 ↗
- Protein ID:
- tegument_protein_VP13_14
- Kingdom:
- euk
Quality
69.1
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Varicellovirus›
Equid_alphaherpesvirus_9
TaxID: 55744
Cluster
View cluster (31 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 372-586
Domain cluster:
rep: tegument_protein_VP13_14__NP_040134__Human_alphaherpesvirus_3__10335__D404-464_489-536_676-686_746-787
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03362.19 best | Herpes_UL47 | 86.7 | 2.20e-24 | 95.8% | 40.8% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2bs2B02 | 1.10.1060.10 | Mainly Alpha › Orthogonal Bundle › Fumarate Reductase Iron-sulfur Protein; Chain B, domain 2 › Alpha-helical ferredoxin | 0.52 | 22.0 | 2.77e-01 | 89.8% | 59.8% |
| 3wvoC02 | 1.10.132.100 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › | 0.51 | 28.0 | 3.46e-01 | 98.6% | 85.4% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5070034 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.54 | 31.0 | 3.48e-01 | 83.7% | 68.6% |
| 3945617 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.53 | 27.0 | 2.88e-01 | 96.3% | 52.4% |
D2
medium
residues 587-709
Domain cluster:
rep: tegument_protein_VP13_14__YP_443894__Papiine_alphaherpesvirus_2__340907__D395-497
CATH (44)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1sumB01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.72 | 57.0 | 6.03e-01 | 91.9% | 96.3% |
| 3fb2A01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.72 | 56.0 | 6.05e-01 | 87.0% | 97.1% |
| 1i6zA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.71 | 61.0 | 5.91e-01 | 91.9% | 82.2% |
| 7c1iA01 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.71 | 45.0 | 4.94e-01 | 95.9% | 78.0% |
| 1fioA00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.70 | 59.0 | 5.09e-01 | 91.9% | 57.9% |
| 2yfaA02 | 1.20.1440.210 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.70 | 49.0 | 5.02e-01 | 91.1% | 75.0% |
| 2qywA00 | 1.20.58.400 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins | 0.70 | 51.0 | 5.65e-01 | 87.0% | 98.9% |
| 1aepA00 | 1.20.120.20 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein | 0.69 | 49.0 | 4.54e-01 | 90.2% | 58.8% |
| 6adqG01 | 1.20.120.80 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle | 0.69 | 63.0 | 5.52e-01 | 100.0% | 71.3% |
| 1jmwA00 | 1.20.120.30 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartate receptor, ligand-binding domain | 0.68 | 60.0 | 5.70e-01 | 99.2% | 80.1% |
| 2oerA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.68 | 47.0 | 4.17e-01 | 92.7% | 48.6% |
| 3pjaJ01 | 1.20.58.190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 | 0.68 | 52.0 | 5.13e-01 | 92.7% | 75.6% |
| 1fewA00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.68 | 58.0 | 5.16e-01 | 91.9% | 77.5% |
| 3zsuA00 | 1.20.120.290 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Oxygen-evolving enhancer protein 3 (PsbQ), four-helix up-down bundle | 0.68 | 53.0 | 5.40e-01 | 100.0% | 86.4% |
| 2b0hA01 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.67 | 54.0 | 5.40e-01 | 100.0% | 83.6% |
| 3ls1A00 | 1.20.120.290 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Oxygen-evolving enhancer protein 3 (PsbQ), four-helix up-down bundle | 0.67 | 54.0 | 5.28e-01 | 100.0% | 78.9% |
| 2uxwA01 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.65 | 45.0 | 3.89e-01 | 74.8% | 46.2% |
| 3kyiA00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.65 | 46.0 | 4.56e-01 | 95.9% | 69.5% |
| 6xy4A01 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.65 | 36.0 | 3.64e-01 | 87.0% | 53.7% |
| 3bhqA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.64 | 51.0 | 4.35e-01 | 95.9% | 52.0% |
| 3frrA00 | 1.20.1260.60 | Mainly Alpha › Up-down Bundle › Ferritin › Vacuolar protein sorting-associated protein Ist1 | 0.63 | 45.0 | 3.92e-01 | 73.2% | 55.4% |
| 7nc3F01 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.63 | 46.0 | 4.74e-01 | 84.6% | 80.7% |
| 1h7cA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 48.0 | 5.15e-01 | 78.9% | 100.0% |
| 1yvwA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.63 | 31.0 | 3.54e-01 | 74.0% | 62.0% |
| 2qffA00 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.62 | 31.0 | 3.86e-01 | 71.5% | 78.4% |
| 4iu9B01 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.62 | 48.0 | 3.97e-01 | 82.9% | 67.4% |
| 3fseB02 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.61 | 52.0 | 4.93e-01 | 91.1% | 98.6% |
| 3a8pA02 | 6.10.140.680 | Special › Helix non-globular › Helix Hairpins › | 0.60 | 43.0 | 4.42e-01 | 84.6% | 78.9% |
| 3m9vA01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.60 | 39.0 | 3.92e-01 | 82.9% | 63.8% |
| 4iu9B02 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.59 | 44.0 | 3.80e-01 | 80.5% | 78.3% |
| 3unoE00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.58 | 50.0 | 4.62e-01 | 98.4% | 94.0% |
| 2c41C01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.57 | 46.0 | 4.40e-01 | 87.8% | 98.7% |
| 3owaA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.57 | 42.0 | 3.74e-01 | 74.8% | 60.8% |
| 3owaA01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.57 | 39.0 | 3.77e-01 | 83.7% | 60.9% |
| 4xt1A00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.56 | 48.0 | 3.67e-01 | 93.5% | 70.8% |
| 2dfkC01 | 1.20.900.10 | Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain | 0.56 | 47.0 | 3.98e-01 | 92.7% | 58.5% |
| 3uonA01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.55 | 48.0 | 3.79e-01 | 99.2% | 78.1% |
| 4wjg400 | 1.20.1260.80 | Mainly Alpha › Up-down Bundle › Ferritin › | 0.54 | 46.0 | 3.61e-01 | 91.9% | 83.5% |
| 4cgrB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.54 | 48.0 | 4.15e-01 | 98.4% | 66.0% |
| 7eptR01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.53 | 44.0 | 3.52e-01 | 91.1% | 73.2% |
| 1oahA02 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.53 | 41.0 | 3.89e-01 | 91.1% | 69.7% |
| 1wteB01 | 1.10.3250.10 | Mainly Alpha › Orthogonal Bundle › type ii restriction endonuclease, domain 1 › type ii restriction endonuclease, domain 1 | 0.51 | 42.0 | 4.04e-01 | 91.1% | 83.7% |
| 4aciA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 42.0 | 3.77e-01 | 90.2% | 63.1% |
| 6elqA01 | 1.20.1270.30 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.51 | 43.0 | 3.82e-01 | 90.2% | 91.5% |
ECOD (66)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4956683 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.74 | 56.0 | 6.11e-01 | 91.9% | 98.0% |
| 4974664 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.73 | 53.0 | 5.43e-01 | 100.0% | 78.3% |
| 3245048 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.72 | 61.0 | 5.82e-01 | 91.9% | 78.6% |
| 3567382 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.72 | 62.0 | 6.40e-01 | 91.1% | 100.0% |
| 3870558 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.72 | 62.0 | 6.30e-01 | 91.9% | 95.0% |
| 3196706 | 603.1.1.97 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin, SNARE | 0.72 | 63.0 | 4.95e-01 | 93.5% | 46.9% |
| 3639947 | 603.1.1.1 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin | 0.71 | 60.0 | 5.17e-01 | 89.4% | 58.9% |
| 4025757 | 603.1.1.6 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin_2 | 0.71 | 61.0 | 4.98e-01 | 91.9% | 52.3% |
| 3892495 | 604.1.1.7 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › SR_plectin_7 | 0.71 | 61.0 | 6.19e-01 | 91.9% | 95.0% |
| 4402843 | 604.1.1.20 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › AKNA | 0.70 | 60.0 | 6.21e-01 | 91.1% | 97.4% |
| 4999598 | 601.1.2.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) | 0.70 | 52.0 | 5.11e-01 | 91.9% | 72.3% |
| 4780326 | 601.19.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein | 0.70 | 60.0 | 5.17e-01 | 93.5% | 99.0% |
| 3915114 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.69 | 58.0 | 5.69e-01 | 88.6% | 93.1% |
| 3934749 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.69 | 55.0 | 5.39e-01 | 91.9% | 77.8% |
| 3488877 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.69 | 61.0 | 4.64e-01 | 95.1% | 54.7% |
| 3218640 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.67 | 58.0 | 5.70e-01 | 91.9% | 91.5% |
| 5050919 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.67 | 55.0 | 5.83e-01 | 95.9% | 99.1% |
| 3367913 | 603.1.1.1 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin | 0.67 | 57.0 | 5.46e-01 | 91.1% | 86.4% |
| 3993997 | 604.1.1.139 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF7799 | 0.67 | 53.0 | 5.45e-01 | 84.6% | 93.3% |
| 5058507 | 603.2.1.0 ↗ | alpha bundles › STAT-like › STAT › STAT | 0.66 | 53.0 | 5.35e-01 | 88.6% | 84.0% |
| 3285802 | 5069.1.1.0 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes | 0.66 | 58.0 | 5.61e-01 | 95.9% | 85.7% |
| 3935032 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.66 | 53.0 | 5.68e-01 | 89.4% | 100.0% |
| 3242888 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.66 | 52.0 | 5.04e-01 | 89.4% | 74.8% |
| 3603360 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.66 | 52.0 | 5.42e-01 | 91.1% | 90.4% |
| 3902141 | 604.1.1.7 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › SR_plectin_7 | 0.66 | 54.0 | 5.72e-01 | 88.6% | 98.2% |
| 3999773 | 604.5.1.0 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) | 0.66 | 56.0 | 5.37e-01 | 91.9% | 80.7% |
| 5061420 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.65 | 56.0 | 4.41e-01 | 91.9% | 88.2% |
| 3743186 | 601.4.1.34 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › SHR3_chaperone | 0.64 | 58.0 | 5.30e-01 | 99.2% | 83.1% |
| 3517342 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.64 | 56.0 | 4.91e-01 | 98.4% | 63.2% |
| 5019779 | 5082.1.1.1 ↗ | alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux | 0.64 | 58.0 | 4.73e-01 | 100.0% | 84.0% |
| 4931283 | 5082.1.1.1 ↗ | alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux | 0.63 | 58.0 | 4.76e-01 | 100.0% | 81.4% |
| 3470417 | 133.1.1.1 ↗ | alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF | 0.63 | 46.0 | 3.86e-01 | 75.6% | 82.9% |
| 3724953 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.63 | 52.0 | 4.87e-01 | 89.4% | 72.3% |
| 3934550 | 3562.1.1.1 ↗ | alpha bundles › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 › Orai-1 | 0.63 | 45.0 | 3.86e-01 | 72.4% | 49.5% |
| 3205696 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.63 | 55.0 | 5.37e-01 | 95.9% | 91.1% |
| 3330281 | 4992.1.1.0 ↗ | extended segments › RelB-like › RelB-like › RelB-like | 0.63 | 41.0 | 4.31e-01 | 71.5% | 72.7% |
| 3919099 | 621.1.1.8 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › GVIN1 | 0.63 | 56.0 | 5.44e-01 | 97.6% | 87.4% |
| 4488200 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.63 | 51.0 | 5.37e-01 | 90.2% | 98.2% |
| 3989665 | 1075.3.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 | 0.62 | 45.0 | 3.83e-01 | 74.8% | 95.6% |
| 3695361 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.61 | 52.0 | 5.21e-01 | 91.9% | 91.2% |
| 3635930 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.61 | 51.0 | 4.76e-01 | 91.1% | 98.7% |
| 3881582 | 310.2.1.31 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › DUF4455 | 0.61 | 48.0 | 5.16e-01 | 89.4% | 100.0% |
| 3581266 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.60 | 47.0 | 4.93e-01 | 91.9% | 93.6% |
| 3663674 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.60 | 52.0 | 4.75e-01 | 95.9% | 76.4% |
| 3940784 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.60 | 49.0 | 5.17e-01 | 90.2% | 99.1% |
| 4017914 | 601.55.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › anti-complement domain of BBK32 › anti-complement domain of BBK32 | 0.60 | 53.0 | 4.79e-01 | 98.4% | 77.6% |
| 3719613 | 1189.1.1.0 ↗ | alpha bundles › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor | 0.57 | 41.0 | 3.35e-01 | 73.2% | 77.3% |
| 3843294 | 904.1.1.0 ↗ | few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain | 0.57 | 40.0 | 3.52e-01 | 72.4% | 67.0% |
| 4417765 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.57 | 40.0 | 4.02e-01 | 73.2% | 99.2% |
| 3301462 | 1075.5.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE | 0.57 | 50.0 | 4.61e-01 | 100.0% | 75.3% |
| 3522682 | 601.19.1.17 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Niban2 | 0.57 | 51.0 | 4.05e-01 | 100.0% | 51.4% |
| 3589835 | 5069.1.3.26 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › DUF1622 | 0.56 | 42.0 | 4.46e-01 | 84.6% | 89.1% |
| 3882141 | 310.2.1.39 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › PF25974 | 0.56 | 47.0 | 4.87e-01 | 97.6% | 99.1% |
| 5057941 | 1075.5.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter | 0.55 | 46.0 | 4.22e-01 | 94.3% | 67.1% |
| 3756948 | 601.19.1.17 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Niban2 | 0.55 | 49.0 | 4.46e-01 | 100.0% | 77.6% |
| 3712649 | 2004.1.1.199 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23,SbcC_Walker_B | 0.55 | 38.0 | 2.48e-01 | 72.4% | 17.0% |
| 3623842 | 601.24.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) › FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) | 0.54 | 43.0 | 4.36e-01 | 96.7% | 87.2% |
| 4000583 | 5001.1.1.60 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srx | 0.54 | 44.0 | 3.75e-01 | 87.0% | 58.0% |
| 3799526 | 5001.1.1.3 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_2 | 0.53 | 44.0 | 3.34e-01 | 91.1% | 70.8% |
| 3544884 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.53 | 41.0 | 3.95e-01 | 86.2% | 77.3% |
| 3220661 | 1075.1.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain | 0.52 | 45.0 | 3.58e-01 | 96.7% | 82.3% |
| 4136906 | 5069.1.3.1 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › Sdh_cyt | 0.52 | 37.0 | 3.74e-01 | 72.4% | 82.5% |
| 3623555 | 5001.1.1.60 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srx | 0.52 | 39.0 | 3.69e-01 | 80.5% | 67.7% |
| 5050120 | 5079.1.1.1 ↗ | alpha duplicates or obligate multimers › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › MgtE | 0.51 | 45.0 | 3.99e-01 | 98.4% | 70.9% |
| 3561892 | 4106.1.1.0 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack | 0.50 | 40.0 | 3.82e-01 | 86.2% | 77.9% |
| 3571743 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.50 | 39.0 | 3.86e-01 | 91.1% | 76.3% |
D3
medium
residues 710-868
Domain cluster:
rep: tegument_protein_VP13_14__YP_009137122__Human_alphaherpesvirus_1__10298__D526-618_648-683
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03362.19 best | Herpes_UL47 | 72.6 | 4.30e-20 | 82.4% | 20.0% |