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tegument_protein_VP13_14

Euk-Vir

Gallid_alphaherpesvirus_1

tegument_protein_VP13_14__YP_182402__Gallid_alphaherpesvirus_1__10386

Identity

Accession:
YP_182402 ↗
Protein ID:
tegument_protein_VP13_14
Kingdom:
euk

Quality

67.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 425-491
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03362.19 best Herpes_UL47 48.9 6.60e-13 100.0% 14.3%
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3nyjA00 1.20.120.770 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Amyloid precursor protein, E2 domain 0.85 77.0 5.53e-01 100.0% 39.8%
4adzA00 1.20.58.1000 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer 0.80 69.0 6.26e-01 100.0% 71.1%
6ynwH01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.80 66.0 6.45e-01 91.0% 82.4%
1yf2A02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.80 71.0 6.10e-01 100.0% 73.8%
2rdcA00 1.10.287.800 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 0.79 70.0 5.56e-01 98.5% 52.6%
3nkzA00 1.20.58.380 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit. 0.78 67.0 5.90e-01 94.0% 76.3%
4i1mB01 1.20.120.1700 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.78 65.0 5.22e-01 92.5% 49.6%
1cunA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.77 55.0 4.75e-01 100.0% 49.0%
3i2wA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.76 67.0 4.43e-01 100.0% 25.2%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.76 64.0 6.11e-01 98.5% 81.0%
6tkvA01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.75 60.0 6.00e-01 88.1% 86.8%
3agtA00 1.20.120.50 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like 0.75 58.0 4.60e-01 83.6% 42.9%
1pd3A00 1.10.287.230 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.75 54.0 5.84e-01 76.1% 100.0%
1b5lA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.74 55.0 4.27e-01 80.6% 67.8%
2az0B00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.73 58.0 5.77e-01 98.5% 81.7%
2r9iA00 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.73 64.0 6.32e-01 100.0% 94.4%
3anwA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.73 64.0 5.44e-01 100.0% 73.5%
2kp8A00 1.20.5.170 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.73 62.0 6.13e-01 98.5% 93.1%
4gzrC00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.73 53.0 5.56e-01 79.1% 88.5%
1ydxA02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.73 58.0 5.32e-01 100.0% 66.7%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.72 61.0 5.84e-01 94.0% 84.4%
3fppA03 6.10.140.1990 Special › Helix non-globular › Helix Hairpins › 0.72 63.0 5.80e-01 100.0% 84.1%
1p49A02 1.10.287.550 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.72 55.0 5.85e-01 80.6% 100.0%
1z0jB00 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.72 49.0 5.47e-01 77.6% 94.1%
4l0rB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.71 60.0 5.92e-01 95.5% 87.7%
3txsC01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.71 57.0 5.55e-01 97.0% 81.3%
2kg7B00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.70 59.0 5.30e-01 95.5% 70.1%
2ddhA04 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.70 60.0 4.91e-01 98.5% 52.3%
4iloA00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.70 61.0 4.21e-01 100.0% 28.4%
1hqoA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.69 57.0 4.61e-01 91.0% 55.0%
2gv9A05 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.69 52.0 5.51e-01 86.6% 93.2%
2jqqA00 1.20.58.1240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 55.0 4.18e-01 95.5% 37.7%
4h63H01 1.20.58.1710 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 55.0 5.46e-01 94.0% 84.7%
2b5dX01 3.20.110.10 Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain 0.69 58.0 3.55e-01 92.5% 29.5%
3aawC01 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.69 52.0 3.65e-01 83.6% 33.5%
3b2eF00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.69 54.0 5.58e-01 86.6% 100.0%
1y6xA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.69 47.0 4.33e-01 77.6% 55.2%
3lphC00 6.10.140.630 Special › Helix non-globular › Helix Hairpins › 0.69 51.0 5.37e-01 89.6% 93.1%
4iggA01 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.69 55.0 5.53e-01 92.5% 86.6%
2lf0A01 4.10.860.10 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain 0.68 52.0 5.48e-01 89.6% 93.3%
3l8rA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.68 54.0 4.76e-01 89.6% 62.7%
2fcwA00 1.20.81.10 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › RAP domain 0.68 58.0 5.10e-01 100.0% 95.3%
2ic6A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 56.0 5.52e-01 92.5% 91.5%
3sjqC00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.67 58.0 5.53e-01 100.0% 86.3%
4q5nA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.67 50.0 4.37e-01 85.1% 51.8%
4ivfA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.66 52.0 4.43e-01 91.0% 50.9%
1b3qA01 1.10.287.560 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Histidine kinase CheA-like, homodimeric domain 0.66 47.0 4.88e-01 77.6% 87.1%
4b6xA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 54.0 5.37e-01 100.0% 91.3%
1wa8A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.65 53.0 4.74e-01 94.0% 63.6%
1m5iA00 1.10.287.450 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.64 55.0 4.78e-01 98.5% 95.2%
2p4vA01 1.10.287.180 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain 0.63 51.0 4.99e-01 92.5% 82.9%
4errB00 1.20.58.1190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 54.0 5.10e-01 100.0% 83.1%
1f45B00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.63 50.0 4.08e-01 89.6% 61.7%
4xxiA00 1.10.490.20 Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins 0.62 45.0 3.44e-01 82.1% 34.7%
1u00A02 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.61 49.0 4.43e-01 95.5% 64.6%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.60 46.0 4.48e-01 82.1% 74.3%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3605713 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.84 61.0 5.58e-01 89.6% 60.0%
3745112 3755.3.1.298 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › ING 0.83 75.0 6.14e-01 100.0% 88.3%
3548194 192.2.1.18 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › ING 0.83 75.0 6.33e-01 100.0% 96.4%
4780326 601.19.1.0 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein 0.82 73.0 5.24e-01 100.0% 69.8%
3847231 601.1.1.97 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › DNA_repr_REX1B 0.81 70.0 5.43e-01 95.5% 45.1%
3754265 603.1.1.187 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › DNA_repr_REX1B 0.80 69.0 6.25e-01 95.5% 72.2%
3270560 4177.1.1.4 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › IMD 0.79 69.0 4.70e-01 100.0% 38.0%
3894567 603.2.1.0 alpha bundles › STAT-like › STAT › STAT 0.79 67.0 4.81e-01 100.0% 33.2%
3179413 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.78 70.0 4.44e-01 100.0% 25.8%
3973453 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.78 62.0 5.89e-01 100.0% 73.8%
3386352 4207.1.1.104 alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › RNA polymerase II holoenzyme component SRB7 (MED21) › Bac_export_2 0.77 69.0 5.84e-01 100.0% 65.5%
3220596 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.76 65.0 5.32e-01 91.0% 53.9%
3239791 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.76 68.0 4.94e-01 100.0% 39.4%
3784740 3712.1.1.1 a+b complex topology › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Med11 0.76 62.0 6.01e-01 97.0% 81.3%
3474600 4207.1.2.48 alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region › Med14 0.76 62.0 5.47e-01 92.5% 61.0%
3526672 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.75 65.0 4.03e-01 100.0% 16.8%
3409567 3755.3.1.324 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF725 0.74 67.0 4.96e-01 100.0% 41.2%
222991 192.10.1.1 alpha bundles › Long alpha-hairpin › DnaK suppressor protein DksA, alpha-hairpin domain › DnaK suppressor protein DksA, alpha-hairpin domain › DksA_N 0.74 62.0 5.58e-01 98.5% 67.4%
3771990 3567.1.1.6 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › DGCR6 0.73 63.0 5.18e-01 100.0% 55.2%
3398929 5041.1.1.32 extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › TMEM141 0.72 63.0 5.70e-01 95.5% 75.6%
3484742 3922.1.1.197 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › BBS2_hp 0.72 63.0 5.84e-01 100.0% 83.5%
3666875 1025.1.1.4 alpha bundles › Stonustoxin helical domain › Stonustoxin helical domain › Stonustoxin helical domain › DUF641 0.72 55.0 5.34e-01 89.6% 76.0%
3448091 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.71 63.0 5.30e-01 100.0% 61.4%
4935068 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.71 61.0 5.87e-01 100.0% 85.3%
3201680 192.17.1.1 alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like › Rbsn 0.71 62.0 5.69e-01 100.0% 77.3%
4010416 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 63.0 5.11e-01 100.0% 59.2%
4250208 3826.1.1.74 alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › FliE 0.70 60.0 5.31e-01 94.0% 69.5%
3824276 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.70 63.0 4.58e-01 100.0% 39.4%
3301730 192.29.1.177 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › LUC7 0.69 61.0 6.03e-01 100.0% 97.1%
3600712 192.5.1.0 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat 0.69 59.0 5.49e-01 98.5% 76.5%
5002748 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.69 59.0 5.72e-01 95.5% 85.3%
4529224 192.15.1.72 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › FliE 0.69 57.0 5.17e-01 91.0% 71.1%
3460130 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.69 51.0 4.88e-01 85.1% 68.8%
3393794 3922.1.1.211 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › DRC7_C 0.67 57.0 4.67e-01 100.0% 52.6%
3598977 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.67 58.0 5.41e-01 98.5% 81.2%
3401938 3602.1.1.14 alpha bundles › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › DUF733 0.65 51.0 4.96e-01 94.0% 78.7%
4025 150.5.1.1 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › WXG100 0.65 53.0 4.74e-01 94.0% 63.6%
4514051 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.63 54.0 4.64e-01 100.0% 60.0%
4936792 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.58 48.0 3.66e-01 100.0% 37.8%
D2 medium residues 492-591
PDB
Domain cluster: representative
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2386 536.1.1.1 alpha arrays › beta-catenin-interacting protein ICAT › beta-catenin-interacting protein ICAT › beta-catenin-interacting protein ICAT › ICAT 0.59 22.0 2.75e-01 92.0% 53.8%