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tegument_protein_VP22
Euk-VirTestudinid_alphaherpesvirus_3
tegument_protein_VP22__YP_009176886__Testudinid_alphaherpesvirus_3__2560801
Identity
- Accession:
- YP_009176886 ↗
- Protein ID:
- tegument_protein_VP22
- Kingdom:
- euk
Quality
61.2
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Scutavirus›
Testudinid_alphaherpesvirus_3
TaxID: 2560801
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 132-204
Domain cluster:
rep: tegument_protein_VP22__YP_068326__Suid_alphaherpesvirus_1__10345__D169-239
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04823.18 best | Herpes_UL49_2 | 48.9 | 7.80e-13 | 78.1% | 59.4% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2wdqC00 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.66 | 45.0 | 3.83e-01 | 71.2% | 49.6% |
| 1zkeA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.66 | 37.0 | 3.56e-01 | 84.9% | 50.6% |
| 2o4cA03 | 3.30.1370.170 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Erythronate-4-phosphate dehydrogenase, dimerisation domain | 0.53 | 36.0 | 3.46e-01 | 71.2% | 75.0% |
| 1e1dA02 | 1.20.1270.20 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.52 | 42.0 | 4.04e-01 | 91.8% | 77.4% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1563561 | 4302.1.1.1 ↗ | a+b duplicates or obligate multimers › BLRF2-like › BLRF2-like › BLRF2-like › Herpes_UL49_2 | 0.95 | 77.0 | 7.03e-01 | 86.3% | 67.8% |
| 4358 | 605.6.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › HP1531-like › HP1531-like › DUF2443 | 0.66 | 37.0 | 3.60e-01 | 84.9% | 51.9% |
| 3803972 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.65 | 37.0 | 3.78e-01 | 94.5% | 57.1% |
| 4937093 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.50 | 39.0 | 3.28e-01 | 82.2% | 73.3% |