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tegument_protein

Euk-Vir

Alcelaphine_gammaherpesvirus_1

tegument_protein__NP_065562__Alcelaphine_gammaherpesvirus_1__35252

Identity

Accession:: NP_065562 ↗
Protein ID:: tegument_protein
Kingdom:: euk

Quality

77.2 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Macavirus› Alcelaphine_gammaherpesvirus_1

TaxID: 35252

Cluster

View cluster (39 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 650-826_857-887_908-947

PDB

Domain cluster: rep: ORF63__YP_010084430__Retroperitoneal_fibromatosis-associated_herpesvirus__111469__D640-805

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04523.19 best	Herpes_U30	214.6	3.30e-63	72.2%	19.3%

D2 medium residues 1-185

PDB

Domain cluster: rep: tegument_protein__YP_010087505__Phascolarctid_gammaherpesvirus_1__2249313__D1-176

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04523.19 best	Herpes_U30	195.6	1.80e-57	96.2%	19.2%

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3vkgB03	1.20.58.1120	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dynein motor heavy chain, linker domain, subdomain 4	0.63	41.0	4.44e-01	83.8%	76.9%
4wqoD00	1.20.1310.10	Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats	0.59	43.0	4.76e-01	84.9%	95.7%
7xxiA01	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.59	44.0	3.79e-01	77.3%	83.1%
4p9tA01	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.59	34.0	4.19e-01	73.0%	88.3%
1dtoA01	1.10.287.30	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › E2 (early) protein, N terminal domain, subdomain 1	0.59	31.0	4.18e-01	70.3%	94.1%
8sorA01	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.58	43.0	3.49e-01	79.5%	40.6%
8fbnB01	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.58	43.0	4.10e-01	80.5%	64.4%
2jexA01	1.10.287.30	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › E2 (early) protein, N terminal domain, subdomain 1	0.57	30.0	4.13e-01	72.4%	97.9%
7zxkC01	1.20.1250.10	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; ›	0.57	38.0	4.19e-01	82.7%	82.0%
3f0cA02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.56	34.0	3.78e-01	74.6%	75.0%
1uw4B00	1.25.40.180	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.55	43.0	3.90e-01	81.6%	75.4%
1b3uA00	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.53	42.0	2.92e-01	82.7%	27.9%
4huqS00	1.10.1760.20	Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 ›	0.51	31.0	3.34e-01	95.7%	67.7%

ECOD (20)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3914266	150.3.1.0 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine	0.59	40.0	4.33e-01	83.8%	79.4%
3365642	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.58	44.0	4.10e-01	76.8%	70.2%
3219967	3567.1.1.82 ↗	a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › Frag1	0.57	43.0	3.98e-01	76.8%	93.2%
3845241	5001.1.1.3 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_2	0.57	42.0	3.56e-01	76.2%	74.4%
3738608	109.4.1.75 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IFRD	0.57	52.0	3.97e-01	100.0%	90.6%
3895832	601.1.1.69 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › CRIC_ras_sig	0.57	34.0	4.12e-01	84.9%	90.8%
3582202	109.4.1.1162 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm_4	0.56	41.0	3.24e-01	76.2%	38.2%
3403421	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.56	42.0	4.59e-01	79.5%	96.6%
3395181	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.55	44.0	4.06e-01	84.3%	66.5%
3494285	109.4.1.1951 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27745	0.54	46.0	3.89e-01	91.4%	89.5%
4171244	601.25.1.1 ↗	alpha bundles › Four-helical up-and-down bundle › TrmE connector domain › TrmE connector domain › MnmE_helical	0.54	39.0	4.03e-01	74.1%	86.9%
3487960	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.53	40.0	3.59e-01	77.8%	54.0%
3513656	192.29.1.0 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding)	0.53	40.0	3.96e-01	88.6%	73.3%
3681562	109.4.1.1987 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30357, PF30359	0.53	42.0	2.82e-01	83.2%	29.7%
None	—		0.51	41.0	2.70e-01	83.8%	26.7%
4362331	601.25.1.1 ↗	alpha bundles › Four-helical up-and-down bundle › TrmE connector domain › TrmE connector domain › MnmE_helical	0.51	39.0	4.07e-01	77.3%	88.2%
4412723	109.4.1.170 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CLASP_N	0.51	46.0	2.97e-01	98.9%	99.1%
3223658	109.4.1.1836 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF29313	0.51	45.0	2.98e-01	94.6%	51.5%
4376955	5001.1.1.9 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › TAS2R	0.50	41.0	3.38e-01	86.5%	77.2%
3179058	5082.1.1.1 ↗	alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux	0.50	38.0	3.69e-01	78.4%	99.5%

D3 medium residues 186-310

PDB

Domain cluster: rep: orf63__YP_009044446__Alcelaphine_gammaherpesvirus_2__138184__D216-316

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04523.19 best	Herpes_U30	151.9	2.90e-44	100.0%	13.9%

D4 medium residues 353-459

PDB

Domain cluster: rep: JM123__YP_238426__Macaca_fuscata_rhadinovirus__272551__D339-466

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04523.19 best	Herpes_U30	140.9	6.40e-41	100.0%	12.7%

D5 medium residues 485-649

PDB

Domain cluster: rep: JM123__YP_238426__Macaca_fuscata_rhadinovirus__272551__D499-654

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04523.19 best	Herpes_U30	235.3	1.80e-69	100.0%	18.7%