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tegument_protein

Euk-Vir

Bovine_gammaherpesvirus_6

tegument_protein__YP_009042042__Bovine_gammaherpesvirus_6__1504288

Identity

Accession:: YP_009042042 ↗
Protein ID:: tegument_protein
Kingdom:: euk

Quality

78.9 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Macavirus› Bovine_gammaherpesvirus_6

TaxID: 1504288

Cluster

View cluster (39 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 640-829_848-871

PDB

Domain cluster: rep: ORF63__YP_010084430__Retroperitoneal_fibromatosis-associated_herpesvirus__111469__D640-805

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04523.19 best	Herpes_U30	148.2	4.00e-43	95.3%	20.2%

CATH (33)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1uurA01	1.20.58.240	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › STAT; domain 1	0.83	44.0	6.12e-01	74.8%	100.0%
3uumA00	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.79	44.0	5.80e-01	76.2%	95.9%
1sumB01	1.20.58.220	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2	0.79	40.0	5.58e-01	72.9%	97.2%
1t72A01	1.20.58.220	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2	0.79	43.0	5.79e-01	89.3%	98.3%
1y1uA01	1.20.1050.20	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › STAT transcription factor, all-alpha domain	0.78	56.0	5.89e-01	72.9%	86.7%
2b0hA01	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.77	37.0	4.80e-01	89.3%	77.3%
4dlqA02	1.25.40.610	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.74	30.0	4.51e-01	71.5%	85.3%
1vctA01	1.20.58.220	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2	0.73	38.0	5.22e-01	93.0%	97.2%
6h2dS01	1.20.1170.10	Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; ›	0.72	57.0	5.65e-01	81.3%	87.9%
3whjA00	6.10.140.1710	Special › Helix non-globular › Helix Hairpins ›	0.71	34.0	4.72e-01	73.4%	89.2%
1j1jA02	1.20.58.200	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2	0.69	30.0	4.50e-01	71.5%	96.5%
2yksA02	1.20.58.390	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain	0.67	33.0	4.38e-01	92.1%	84.6%
1dn1B00	1.20.58.70	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.66	48.0	4.76e-01	79.9%	70.7%
2c9oB02	2.40.50.360	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain	0.65	19.0	2.69e-01	82.2%	47.8%
4k1pE00	1.20.1170.10	Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; ›	0.65	56.0	4.82e-01	90.2%	86.2%
2nrjA01	1.20.1170.10	Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; ›	0.63	54.0	4.67e-01	91.1%	80.3%
6w08A01	1.20.1170.10	Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; ›	0.61	53.0	4.52e-01	92.5%	84.1%
7p3rA01	1.20.1170.10	Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; ›	0.61	52.0	4.53e-01	90.7%	88.0%
2q12A00	1.20.1270.60	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain	0.60	44.0	4.22e-01	74.3%	71.1%
3u1wA02	3.10.450.360	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.60	15.0	2.77e-01	86.0%	69.7%
3qweA00	1.20.1270.60	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain	0.59	44.0	4.10e-01	74.8%	81.5%
2efkA01	1.20.1270.60	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain	0.58	41.0	3.85e-01	72.4%	80.2%
3agtA00	1.20.120.50	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like	0.58	28.0	3.53e-01	85.0%	73.7%
1gvnA00	1.10.8.130	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 ›	0.57	24.0	3.87e-01	94.4%	100.0%
5j1gA00	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.56	49.0	4.81e-01	92.5%	84.2%
1l0wA01	2.40.50.140	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins	0.56	18.0	2.53e-01	85.5%	53.8%
4fzsA00	1.20.1270.60	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain	0.55	40.0	4.10e-01	74.3%	90.9%
2v0xA01	1.10.287.3160	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.55	39.0	4.42e-01	78.5%	92.3%
3pltA00	1.20.1270.60	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain	0.54	40.0	4.01e-01	77.1%	74.8%
4mt4A00	1.20.1600.10	Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP)	0.53	43.0	3.28e-01	83.6%	84.5%
4uoiC00	3.30.160.890	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Hepatitis C virus envelope glycoprotein E1, chain C	0.53	14.0	2.89e-01	86.9%	90.2%
4oxwA00	3.30.1520.10	Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain	0.52	27.0	3.71e-01	83.2%	100.0%
2rajA02	3.30.1520.10	Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain	0.50	27.0	3.44e-01	83.6%	87.3%

ECOD (42)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3935025	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.85	46.0	6.24e-01	76.6%	96.7%
3522858	604.1.1.1 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin	0.84	42.0	6.07e-01	71.0%	100.0%
1877523	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.83	44.0	6.12e-01	70.6%	100.0%
3999485	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.80	48.0	5.81e-01	80.8%	87.5%
4881130	5057.1.1.1 ↗	alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb	0.80	35.0	5.50e-01	73.4%	100.0%
3491748	603.2.1.0 ↗	alpha bundles › STAT-like › STAT › STAT	0.80	52.0	5.66e-01	74.8%	77.2%
3250178	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.80	45.0	5.26e-01	75.7%	76.8%
3813013	604.1.1.110 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › WIT1_2_N	0.79	56.0	6.44e-01	78.0%	95.6%
3416318	5057.1.1.1 ↗	alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb	0.79	35.0	4.68e-01	88.8%	74.8%
4024356	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.79	57.0	6.56e-01	79.4%	98.1%
3719591	4121.1.1.0 ↗	a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like	0.75	58.0	5.81e-01	78.5%	83.3%
4975983	150.1.1.0 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin	0.75	50.0	6.03e-01	79.0%	100.0%
3789529	604.12.1.4 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › ATG1-like_MIT1	0.74	45.0	5.74e-01	74.8%	100.0%
3615269	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.74	53.0	5.44e-01	84.6%	74.8%
3432339	604.1.1.134 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF28715	0.74	50.0	5.42e-01	81.3%	80.6%
3197104	1065.1.1.0 ↗	alpha bundles › SPX domain › SPX domain › SPX domain	0.73	53.0	5.75e-01	77.6%	85.4%
3996708	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.73	45.0	5.66e-01	74.3%	100.0%
3912433	603.1.1.5 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin-6_N	0.72	46.0	5.68e-01	87.4%	100.0%
3688677	4121.1.1.7 ↗	a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › PF26616	0.71	45.0	3.66e-01	77.6%	35.3%
3730963	4121.1.1.0 ↗	a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like	0.71	59.0	4.55e-01	85.0%	52.3%
3722750	4121.1.1.0 ↗	a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like	0.71	54.0	4.65e-01	77.6%	58.7%
4029995	174.1.1.0 ↗	few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain	0.71	47.0	5.13e-01	82.7%	79.4%
3693035	603.1.1.19 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin-18_N	0.71	53.0	4.84e-01	76.6%	66.5%
3914910	5057.1.1.1 ↗	alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb	0.70	37.0	4.38e-01	94.4%	72.0%
3174045	603.1.1.19 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin-18_N	0.70	53.0	5.09e-01	83.6%	68.2%
3921396	604.1.1.92 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › SR_desmoplakin_3	0.68	52.0	4.80e-01	84.6%	62.6%
3655677	632.22.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats	0.68	48.0	5.13e-01	77.6%	81.6%
4386701	310.2.1.35 ↗	a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › PF28954	0.64	41.0	4.81e-01	73.4%	91.7%
4026657	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.64	44.0	5.19e-01	83.2%	96.8%
3332286	3684.1.1.2 ↗	alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › BPS1	0.64	51.0	4.93e-01	89.7%	75.2%
4259224	3755.3.1.0 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin	0.62	41.0	4.81e-01	73.4%	91.6%
3489761	4177.1.1.2 ↗	alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR	0.62	45.0	4.44e-01	72.9%	87.6%
3594516	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.61	44.0	4.68e-01	91.1%	83.2%
4627992	3755.4.1.0 ↗	alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain	0.61	43.0	3.75e-01	72.4%	48.9%
3938687	5057.1.1.0 ↗	alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore	0.59	36.0	4.18e-01	94.4%	81.9%
4231809	2004.1.1.87 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N	0.59	42.0	3.18e-01	71.0%	65.5%
4026019	2004.1.1.87 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N	0.58	45.0	3.33e-01	79.0%	86.3%
3691415	2004.1.1.748 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15, AAA_23, SbcC_Walker_B	0.56	43.0	3.17e-01	78.5%	84.3%
3473158	109.62.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › AFF4 C-terminal homology domain › AFF4 C-terminal homology domain	0.55	47.0	4.21e-01	91.6%	77.0%
3936858	11.12.1.2 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD,Neur_chan_memb	0.55	37.0	2.89e-01	83.2%	32.4%
3896919	5057.1.1.1 ↗	alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb	0.54	38.0	3.98e-01	94.4%	76.9%
3230165	5001.1.1.66 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Srg	0.53	38.0	3.38e-01	72.4%	68.1%

D2 medium residues 1-178

PDB

Domain cluster: rep: tegument_protein__YP_010087505__Phascolarctid_gammaherpesvirus_1__2249313__D1-176

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04523.19 best	Herpes_U30	123.4	1.20e-35	96.1%	17.9%

D3 medium residues 179-308

PDB

Domain cluster: rep: orf63__YP_009044446__Alcelaphine_gammaherpesvirus_2__138184__D216-316

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04523.19 best	Herpes_U30	98.8	3.20e-28	99.2%	13.7%

D4 medium residues 309-454

PDB

Domain cluster: rep: JM123__YP_238426__Macaca_fuscata_rhadinovirus__272551__D339-466

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04523.19 best	Herpes_U30	133.0	1.50e-38	100.0%	17.2%

D5 medium residues 494-639

PDB

Domain cluster: rep: JM123__YP_238426__Macaca_fuscata_rhadinovirus__272551__D499-654

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04523.19 best	Herpes_U30	161.5	3.80e-47	99.3%	15.0%