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term1_saliva_scaffold_14_prodigal-single.1__X__X__00001

Bact-Vir

term1_saliva_scaffold_14_prodigal-single.1__X__X__00001

Identity

Kingdom:
phage

Quality

85.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 446-553
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00877.26 best NLPC_P60 77.0 1.40e-21 86.1% 80.0%
D2 medium residues 1-76
PDB
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3lzhA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.66 46.0 4.32e-01 72.4% 100.0%
3havA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.65 47.0 4.48e-01 76.3% 96.6%
4hdjA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.64 50.0 3.21e-01 84.2% 82.8%
3dueA00 3.40.1420.30 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › 0.64 53.0 4.46e-01 90.8% 81.9%
1a2pA00 3.10.450.30 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Microbial ribonucleases 0.59 42.0 3.74e-01 75.0% 52.8%
4immA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 51.0 3.39e-01 100.0% 34.7%
1pguA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 50.0 3.36e-01 100.0% 33.0%
2ymsC00 2.40.10.480 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.57 44.0 4.44e-01 94.7% 82.7%
6fcvB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 49.0 3.16e-01 97.4% 27.7%
3mmyA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 50.0 3.25e-01 100.0% 33.3%
2xu7A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 50.0 3.22e-01 100.0% 32.8%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 35.0 3.88e-01 73.7% 85.5%
2in5A00 2.40.360.10 Mainly Beta › Beta Barrel › YmcC-like fold › YmcC-like 0.56 42.0 3.18e-01 86.8% 32.3%
2ymsB00 2.40.10.480 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.56 44.0 4.47e-01 94.7% 87.8%
4ld1A00 2.60.450.20 Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › 0.56 37.0 2.89e-01 78.9% 33.1%
5kiqA02 3.10.20.890 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.56 35.0 3.59e-01 89.5% 66.7%
4j0wA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 49.0 3.21e-01 98.7% 28.1%
6m90A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 49.0 3.32e-01 100.0% 34.2%
4g56D00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 49.0 3.27e-01 100.0% 35.0%
5h1kB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 48.0 3.20e-01 100.0% 34.4%
2ymsA00 2.40.128.630 Mainly Beta › Beta Barrel › Lipocalin › 0.55 49.0 4.18e-01 100.0% 83.1%
6g6qA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 49.0 3.99e-01 100.0% 68.8%
4wjsA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 48.0 3.10e-01 100.0% 28.2%
2ovrB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 48.0 3.17e-01 100.0% 28.9%
4u7aA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 47.0 3.10e-01 100.0% 37.4%
7apkF01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 48.0 3.16e-01 100.0% 34.5%
5hqgA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 48.0 3.15e-01 100.0% 31.2%
2ogqA01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.54 38.0 3.21e-01 93.4% 44.4%
1k3xA01 3.20.190.10 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal 0.53 46.0 3.91e-01 94.7% 80.2%
4pswB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 46.0 3.01e-01 100.0% 29.2%
2aq5A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 46.0 3.07e-01 100.0% 32.5%
5ic7A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 45.0 2.98e-01 98.7% 27.4%
4gp3A03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 44.0 3.88e-01 98.7% 85.2%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.52 39.0 4.10e-01 89.5% 89.9%
2pm9A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 44.0 2.97e-01 100.0% 37.0%
1hcdA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 44.0 3.90e-01 98.7% 87.3%
1whzA00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.52 35.0 3.67e-01 71.1% 79.7%
8eg0B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 45.0 2.94e-01 100.0% 29.4%
6qk7A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 43.0 2.89e-01 98.7% 42.9%
2aw4Z00 4.10.830.30 Few Secondary Structures › Irregular › 30s Ribosomal Protein S14; Chain N › Ribosomal protein L31 0.51 29.0 3.01e-01 75.0% 58.6%
2yugA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.50 42.0 3.49e-01 100.0% 72.3%
ECOD (74)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3950423 243.3.1.24 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › LGFP 0.91 87.0 7.02e-01 100.0% 60.8%
3950424 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.90 64.0 7.14e-01 73.7% 93.3%
3957482 809.2.1.0 a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.87 61.0 7.11e-01 93.4% 100.0%
3386275 809.2.1.1 a+b two layers › BLIP-like › BT0923-like › BT0923-like › PepSY_like 0.73 50.0 5.52e-01 75.0% 90.0%
68497 809.2.1.1 a+b two layers › BLIP-like › BT0923-like › BT0923-like › PepSY_like 0.72 51.0 5.71e-01 86.8% 100.0%
3435779 809.2.1.0 a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.71 47.0 5.29e-01 94.7% 92.7%
3386276 809.2.1.1 a+b two layers › BLIP-like › BT0923-like › BT0923-like › PepSY_like 0.67 46.0 5.14e-01 90.8% 100.0%
3680446 5.1.10.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.64 42.0 3.48e-01 77.6% 38.5%
3517889 331.23.1.0 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.62 42.0 3.87e-01 71.1% 62.5%
4929392 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.61 36.0 3.49e-01 71.1% 48.9%
3914165 5.1.4.269 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, HELP, Beta-prop_EML 0.61 49.0 3.13e-01 88.2% 75.0%
4953959 5.1.4.45 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_3 0.59 51.0 3.32e-01 97.4% 28.2%
3806989 5.1.5.66 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FBA_1 0.59 46.0 3.13e-01 85.5% 48.1%
4562940 5.1.4.40 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.59 51.0 3.33e-01 100.0% 32.4%
3875861 5.1.4.146 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 52.0 3.18e-01 100.0% 22.4%
4331217 5.1.4.40 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.58 50.0 3.28e-01 100.0% 31.3%
3518934 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.58 51.0 3.42e-01 100.0% 36.3%
3993185 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 50.0 3.26e-01 97.4% 26.0%
None 0.57 51.0 3.30e-01 100.0% 29.9%
5038620 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 51.0 3.26e-01 100.0% 31.4%
3932862 5.1.4.381 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, WD40_Prp19 0.57 49.0 3.25e-01 100.0% 30.5%
3634343 5.1.5.93 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_EMC1_N 0.57 51.0 3.09e-01 100.0% 97.1%
3685742 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 49.0 3.08e-01 97.4% 21.0%
3923605 5.1.5.162 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_ACSF4 0.57 50.0 3.24e-01 100.0% 27.2%
3416102 5.1.4.344 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_SCAP 0.56 50.0 3.20e-01 100.0% 26.2%
3167728 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.56 49.0 3.29e-01 100.0% 35.2%
3789860 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 51.0 3.32e-01 100.0% 27.4%
3606812 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.56 50.0 3.08e-01 100.0% 22.6%
3927081 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 50.0 3.28e-01 100.0% 34.8%
5035419 5.1.4.40 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.56 49.0 3.32e-01 100.0% 33.6%
4019683 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.56 50.0 3.20e-01 100.0% 43.0%
3739678 5.1.4.74 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Vps16_N 0.56 49.0 3.07e-01 97.4% 22.7%
4217971 5.1.4.40 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.56 50.0 3.21e-01 100.0% 27.1%
3514791 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.56 49.0 3.16e-01 100.0% 28.5%
3495257 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.56 50.0 3.17e-01 100.0% 39.2%
4773066 5.1.4.40 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.56 44.0 4.47e-01 94.7% 87.8%
4969651 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 49.0 3.32e-01 100.0% 34.6%
3754362 3426.1.1.0 beta meanders › Telethonin › Telethonin › Telethonin 0.56 38.0 4.24e-01 92.1% 91.7%
3782896 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 49.0 3.17e-01 100.0% 27.1%
5059545 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.55 49.0 3.26e-01 100.0% 31.4%
3265238 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 49.0 3.23e-01 100.0% 31.4%
3436240 5.1.4.550 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.55 48.0 3.23e-01 100.0% 37.4%
3316791 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.55 49.0 3.17e-01 100.0% 32.3%
3228101 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 49.0 3.27e-01 100.0% 35.1%
3264768 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 48.0 3.23e-01 100.0% 32.4%
3740470 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 49.0 3.28e-01 100.0% 33.2%
3935617 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 50.0 3.22e-01 100.0% 36.8%
3212863 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 48.0 3.25e-01 100.0% 36.5%
3947013 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.55 47.0 4.50e-01 94.7% 80.0%
None 0.55 49.0 3.20e-01 100.0% 32.4%
3998201 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 48.0 3.60e-01 100.0% 70.8%
3999013 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 48.0 3.03e-01 100.0% 25.4%
3617288 5.1.4.254 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_NOL10_N 0.55 48.0 3.12e-01 100.0% 29.4%
3582902 5.1.10.4 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › SSL_N 0.55 47.0 4.06e-01 100.0% 76.0%
3739946 5.1.4.265 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_WDR3_1st 0.54 48.0 3.07e-01 100.0% 22.6%
3667367 5.1.3.4 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › WD40 0.54 47.0 3.33e-01 98.7% 38.4%
3248628 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 48.0 3.19e-01 100.0% 30.6%
3264012 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 49.0 3.06e-01 100.0% 24.3%
3413325 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 47.0 3.03e-01 98.7% 32.6%
3628522 5.1.4.489 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Prenyltrans 0.54 45.0 2.62e-01 97.4% 16.0%
3928902 5.1.4.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.54 48.0 3.20e-01 100.0% 33.1%
3843361 5.1.4.269 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, HELP, Beta-prop_EML 0.54 47.0 3.09e-01 100.0% 33.0%
3613182 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 48.0 2.98e-01 100.0% 29.4%
3629602 5.1.5.148 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, HELP, Beta-prop_EML 0.54 47.0 3.10e-01 100.0% 30.9%
3212116 5.1.4.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.53 47.0 3.07e-01 100.0% 32.9%
3781730 5.1.11.3 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › Utp8_b_propeller 0.53 45.0 2.98e-01 100.0% 34.6%
4436563 5.1.4.171 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › HELP+Beta-prop_EML 0.53 46.0 3.07e-01 100.0% 33.1%
3248413 223.2.1.1 a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin 0.52 39.0 3.28e-01 98.7% 45.2%
4167925 5.1.4.309 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF29630 0.52 46.0 3.02e-01 100.0% 24.8%
3601508 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.51 44.0 2.92e-01 100.0% 34.9%
3263885 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.51 44.0 2.90e-01 100.0% 27.6%
4863414 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 44.0 3.36e-01 100.0% 60.1%
4009148 292.2.1.14 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › SWIM 0.50 41.0 3.88e-01 94.7% 74.4%
3507591 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 43.0 2.97e-01 100.0% 31.2%