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term1_saliva_scaffold_14_prodigal-single.1__X__X__00005

Bact-Vir

term1_saliva_scaffold_14_prodigal-single.1__X__X__00005

Identity

Kingdom:
phage

Quality

91.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 90-218
PDB
Domain cluster: rep: SR-VP_0-2_scaffold_141_4953755_prodigal-single.1__X__X__00038__D86-218
D2 medium residues 1-89
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5d3xB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 43.0 3.75e-01 76.4% 80.9%
2vrwB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 43.0 3.94e-01 76.4% 83.5%
1v61A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 43.0 3.84e-01 78.7% 72.7%
3pg7A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 42.0 3.99e-01 77.5% 82.7%
2dfkC02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 43.0 3.69e-01 78.7% 75.2%
2z0qA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 42.0 3.77e-01 77.5% 88.3%
5cvmA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.57 40.0 2.83e-01 75.3% 99.4%
1dbzA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.56 38.0 3.10e-01 70.8% 63.6%
3ei3A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 41.0 2.83e-01 78.7% 83.0%
1fhoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 41.0 3.81e-01 82.0% 78.2%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 40.0 3.80e-01 78.7% 83.5%
3mpxA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 40.0 3.90e-01 77.5% 93.8%
2j7qA00 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.54 41.0 3.08e-01 80.9% 86.1%
3jtzA00 3.30.160.390 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain 0.54 38.0 4.01e-01 89.9% 83.1%
5u78C00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 39.0 3.66e-01 78.7% 87.9%
2g8sB00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.52 41.0 2.81e-01 86.5% 97.1%
4mf9B01 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.52 45.0 3.71e-01 96.6% 76.4%
5hy7B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 44.0 2.91e-01 96.6% 87.6%
3u4yA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 41.0 2.89e-01 88.8% 97.5%
2hezA00 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.51 35.0 2.49e-01 71.9% 74.6%
2i0rA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 36.0 2.50e-01 75.3% 31.7%
3nvqA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 42.0 2.70e-01 92.1% 94.4%
1pz7A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 35.0 2.81e-01 73.0% 53.7%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3523477 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.61 44.0 3.50e-01 76.4% 72.4%
3527354 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.60 43.0 3.69e-01 75.3% 82.1%
3478828 220.1.1.28 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › hSac2 0.60 44.0 3.58e-01 77.5% 75.7%
3922536 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 43.0 3.66e-01 78.7% 67.7%
3263932 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 43.0 3.76e-01 78.7% 77.1%
3778135 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.59 43.0 3.66e-01 78.7% 71.3%
3173029 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 42.0 3.30e-01 75.3% 53.2%
3175878 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 43.0 3.59e-01 77.5% 62.6%
3250807 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.58 40.0 3.10e-01 70.8% 80.5%
3249763 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 42.0 3.66e-01 77.5% 69.0%
3263647 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 41.0 3.74e-01 74.2% 75.0%
5078649 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.58 46.0 3.55e-01 86.5% 80.5%
3218205 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.57 45.0 4.08e-01 86.5% 81.6%
3512735 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.57 40.0 3.07e-01 75.3% 65.8%
3796699 5.1.4.55 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ELYS-bb 0.56 44.0 2.77e-01 86.5% 85.3%
3256259 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.56 42.0 2.92e-01 84.3% 81.7%
3262415 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 40.0 3.72e-01 76.4% 86.1%
4140296 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.55 39.0 3.44e-01 75.3% 70.7%
3891317 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.55 39.0 3.51e-01 76.4% 70.4%
3660450 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.55 40.0 3.25e-01 76.4% 64.6%
4007983 252.2.1.5 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_3 0.55 38.0 3.81e-01 86.5% 68.4%
5007551 220.1.1.87 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.55 38.0 3.55e-01 74.2% 80.8%
3531579 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.55 39.0 3.35e-01 76.4% 60.6%
3250597 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.55 38.0 3.64e-01 74.2% 84.5%
3995040 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.55 37.0 2.91e-01 70.8% 47.7%
3929729 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.54 40.0 3.13e-01 77.5% 76.4%
3264236 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.54 38.0 3.75e-01 74.2% 87.0%
3646080 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.54 39.0 3.32e-01 74.2% 81.3%
3782222 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 39.0 3.32e-01 76.4% 60.0%
3789025 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.54 39.0 3.46e-01 76.4% 69.6%
3529648 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.54 39.0 3.42e-01 76.4% 67.9%
3699518 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.54 38.0 3.50e-01 75.3% 72.8%
4996362 220.1.1.87 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.54 38.0 3.61e-01 74.2% 88.0%
3591463 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.54 38.0 3.56e-01 75.3% 80.0%
3480535 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 38.0 3.65e-01 74.2% 77.1%
3901783 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.54 39.0 2.94e-01 77.5% 53.5%
3899369 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.54 38.0 3.32e-01 76.4% 62.7%
3548037 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.54 38.0 3.44e-01 75.3% 70.8%
3233725 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.54 39.0 3.27e-01 77.5% 60.0%
3251374 10.1.1.35 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.53 38.0 2.81e-01 74.2% 43.3%
3270836 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.53 39.0 3.61e-01 77.5% 80.0%
3654211 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.53 40.0 3.24e-01 80.9% 65.7%
3176453 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.53 37.0 3.29e-01 74.2% 67.9%
3407758 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.53 38.0 3.61e-01 77.5% 75.7%
3507415 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.53 38.0 2.99e-01 75.3% 51.6%
3441153 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 37.0 2.43e-01 73.0% 23.9%
3259128 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.52 37.0 3.43e-01 76.4% 74.4%
3249490 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.52 38.0 3.57e-01 78.7% 80.9%
3665226 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 39.0 2.76e-01 83.1% 34.8%
2324014 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.52 37.0 3.01e-01 77.5% 53.7%
3254772 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.52 35.0 2.69e-01 70.8% 80.0%
3615586 5.1.4.36 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.51 42.0 2.79e-01 93.3% 93.6%
3287961 3844.2.1.1 ↗ a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG 0.51 38.0 2.85e-01 83.1% 54.0%