←Back to structures
term1_saliva_scaffold_14_prodigal-single.1__X__X__00033
Bact-Virterm1_saliva_scaffold_14_prodigal-single.1__X__X__00033
Identity
- Kingdom:
- phage
Quality
71.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 34-108
Domain cluster:
rep: NC_041887.1__YP_009596348.1__FDH04_gp046__00046__D33-106
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF06737.20 best | Transglycosylas | 102.3 | 2.50e-29 | 94.7% | 94.8% |
D2
high
residues 206-254
Domain cluster:
rep: IMGVR_UViG_3300029305_005928-3300029305-Ga0307249_101033452__D259-301
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01476.27 best | LysM | 36.6 | 4.80e-09 | 95.9% | 97.7% |
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4b8vA01 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.95 | 81.0 | 7.20e-01 | 100.0% | 67.2% |
| 5c8qB02 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.94 | 80.0 | 8.29e-01 | 100.0% | 97.8% |
| 4b8vA02 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.93 | 80.0 | 6.91e-01 | 100.0% | 63.0% |
| 4b8vA03 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.86 | 72.0 | 7.23e-01 | 100.0% | 91.8% |
| 2mtzA01 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.83 | 67.0 | 6.73e-01 | 100.0% | 88.0% |
| 2mkxA00 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.82 | 66.0 | 6.55e-01 | 100.0% | 86.3% |
| 1e0gA00 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.82 | 65.0 | 6.58e-01 | 100.0% | 89.6% |
| 2djpA00 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.77 | 63.0 | 5.43e-01 | 100.0% | 58.4% |
| 2gu1A01 | 3.10.450.350 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.72 | 66.0 | 5.31e-01 | 100.0% | 55.7% |
| 2fmyA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 53.0 | 4.55e-01 | 98.0% | 92.7% |
| 3sluB01 | 3.10.450.350 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.62 | 53.0 | 4.41e-01 | 100.0% | 53.8% |
| 2x3eA01 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.61 | 48.0 | 3.28e-01 | 85.7% | 81.3% |
| 7pzaA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 47.0 | 4.06e-01 | 98.0% | 86.0% |
| 1ft9A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 45.0 | 4.07e-01 | 100.0% | 89.9% |
| 2j3lA03 | 3.90.960.10 | Alpha Beta › Alpha-Beta Complex › YbaK protein › YbaK/aminoacyl-tRNA synthetase-associated domain | 0.51 | 40.0 | 3.07e-01 | 100.0% | 79.6% |
ECOD (91)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4680476 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.96 | 83.0 | 7.17e-01 | 100.0% | 64.3% |
| 4277578 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.95 | 81.0 | 8.09e-01 | 100.0% | 90.0% |
| 3165071 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.93 | 78.0 | 7.52e-01 | 100.0% | 80.0% |
| 2074716 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.93 | 80.0 | 7.91e-01 | 100.0% | 88.2% |
| 2124476 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.93 | 80.0 | 5.65e-01 | 100.0% | 34.1% |
| 3303205 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.92 | 82.0 | 7.61e-01 | 100.0% | 78.3% |
| 3838194 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.92 | 78.0 | 8.09e-01 | 100.0% | 97.8% |
| 3349612 | 101.15.1.5 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 | 0.92 | 75.0 | 7.52e-01 | 100.0% | 86.0% |
| 3974521 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.92 | 77.0 | 7.12e-01 | 100.0% | 73.3% |
| 3898121 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.92 | 76.0 | 7.34e-01 | 100.0% | 80.0% |
| 3675929 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.91 | 76.0 | 7.32e-01 | 100.0% | 80.0% |
| 4118675 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.91 | 76.0 | 7.89e-01 | 100.0% | 97.8% |
| 4448562 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.91 | 74.0 | 7.13e-01 | 98.0% | 78.2% |
| 3981327 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.91 | 78.0 | 7.53e-01 | 100.0% | 83.3% |
| 2047861 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.90 | 77.0 | 7.23e-01 | 100.0% | 77.6% |
| 4149501 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.90 | 76.0 | 7.62e-01 | 100.0% | 90.0% |
| 3691758 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.90 | 79.0 | 7.64e-01 | 100.0% | 85.5% |
| 3691772 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.90 | 77.0 | 7.37e-01 | 100.0% | 81.8% |
| 4555777 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.90 | 73.0 | 6.40e-01 | 100.0% | 61.4% |
| 4404011 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.90 | 74.0 | 6.53e-01 | 100.0% | 62.9% |
| 2124917 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.90 | 76.0 | 5.15e-01 | 100.0% | 28.0% |
| 3426433 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.90 | 76.0 | 7.07e-01 | 100.0% | 75.0% |
| 3324708 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.90 | 76.0 | 7.05e-01 | 100.0% | 75.0% |
| 3381619 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.90 | 82.0 | 4.89e-01 | 100.0% | 16.4% |
| 3720958 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.90 | 75.0 | 7.54e-01 | 100.0% | 90.0% |
| 3670445 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.90 | 82.0 | 4.85e-01 | 100.0% | 15.5% |
| 3234671 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.89 | 75.0 | 7.23e-01 | 100.0% | 81.8% |
| 3417561 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.89 | 81.0 | 4.86e-01 | 100.0% | 16.3% |
| 2124918 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.89 | 81.0 | 5.68e-01 | 100.0% | 35.3% |
| 3587382 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.89 | 81.0 | 7.78e-01 | 100.0% | 87.3% |
| 5004560 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.89 | 81.0 | 7.80e-01 | 100.0% | 87.3% |
| 3299119 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.88 | 80.0 | 5.81e-01 | 100.0% | 40.8% |
| 3359799 | 101.15.1.10 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM2_NFP | 0.88 | 80.0 | 5.66e-01 | 100.0% | 36.1% |
| 4137479 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.88 | 75.0 | 6.11e-01 | 100.0% | 52.9% |
| 3636417 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.88 | 77.0 | 7.48e-01 | 100.0% | 88.7% |
| 3903953 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.88 | 70.0 | 7.03e-01 | 100.0% | 86.0% |
| 3819870 | 101.15.1.6 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM2_CERK1_LYK3_4_5 | 0.88 | 80.0 | 5.61e-01 | 100.0% | 35.6% |
| 4492966 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.87 | 73.0 | 7.04e-01 | 100.0% | 81.8% |
| 1178373 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.87 | 74.0 | 6.72e-01 | 100.0% | 71.4% |
| 4128043 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.87 | 72.0 | 7.46e-01 | 100.0% | 100.0% |
| 4022922 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.87 | 72.0 | 6.99e-01 | 100.0% | 81.8% |
| 4177991 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.87 | 77.0 | 7.35e-01 | 100.0% | 85.5% |
| 2042916 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.86 | 72.0 | 6.99e-01 | 100.0% | 83.3% |
| 4069716 | 101.15.1.14 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM, LysM2_CERK1_LYK3_4_5 | 0.86 | 77.0 | 5.66e-01 | 100.0% | 40.0% |
| 3651054 | 101.15.1.10 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM2_NFP | 0.85 | 76.0 | 5.21e-01 | 100.0% | 31.0% |
| 3230171 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.85 | 71.0 | 7.12e-01 | 100.0% | 90.0% |
| 3183656 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.85 | 77.0 | 6.96e-01 | 100.0% | 75.4% |
| 3375189 | 101.15.1.10 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM2_NFP | 0.85 | 75.0 | 6.62e-01 | 100.0% | 68.6% |
| 3517460 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.85 | 71.0 | 6.86e-01 | 100.0% | 81.8% |
| 3188069 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.85 | 76.0 | 6.91e-01 | 100.0% | 75.4% |
| 4662825 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.85 | 73.0 | 6.66e-01 | 100.0% | 72.3% |
| 4491522 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.85 | 70.0 | 6.58e-01 | 100.0% | 75.0% |
| 3181142 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.84 | 73.0 | 7.31e-01 | 95.9% | 96.0% |
| 3247196 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.84 | 70.0 | 6.53e-01 | 100.0% | 75.0% |
| 3656643 | 101.15.1.9 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM1_NFP_LYK, LysM2_CERK1_LYK3_4_5 | 0.84 | 77.0 | 5.45e-01 | 100.0% | 36.3% |
| 4023232 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.84 | 72.0 | 6.76e-01 | 100.0% | 78.3% |
| 3240624 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.84 | 69.0 | 6.69e-01 | 100.0% | 81.8% |
| 3337328 | 101.15.1.14 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM, LysM2_CERK1_LYK3_4_5 | 0.83 | 77.0 | 4.66e-01 | 100.0% | 17.3% |
| 4483829 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.83 | 75.0 | 6.77e-01 | 100.0% | 84.6% |
| 3925474 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.83 | 70.0 | 6.95e-01 | 100.0% | 90.0% |
| 3979943 | 101.15.1.3 ↗ | alpha arrays › HTH › LysM domain › LysM domain › Phage_tail_X | 0.83 | 73.0 | 7.30e-01 | 95.9% | 94.0% |
| 3421939 | 101.15.1.9 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM1_NFP_LYK, LysM2_CERK1_LYK3_4_5 | 0.83 | 74.0 | 5.38e-01 | 100.0% | 38.4% |
| 3305689 | 101.15.1.9 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM1_NFP_LYK, LysM2_CERK1_LYK3_4_5 | 0.83 | 71.0 | 5.06e-01 | 100.0% | 33.6% |
| 3846469 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.82 | 69.0 | 5.56e-01 | 100.0% | 50.0% |
| 3457321 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.82 | 66.0 | 6.88e-01 | 100.0% | 95.6% |
| 3837369 | 101.15.1.6 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM2_CERK1_LYK3_4_5 | 0.82 | 71.0 | 5.34e-01 | 100.0% | 40.9% |
| 3989756 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.82 | 71.0 | 7.21e-01 | 98.0% | 97.9% |
| 3240632 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.82 | 64.0 | 6.64e-01 | 100.0% | 93.3% |
| 3248434 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.82 | 71.0 | 7.10e-01 | 100.0% | 95.9% |
| 3185732 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.82 | 73.0 | 7.07e-01 | 100.0% | 92.7% |
| 3191020 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.81 | 73.0 | 6.80e-01 | 100.0% | 81.7% |
| 2895417 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.81 | 71.0 | 6.10e-01 | 100.0% | 63.6% |
| 3365578 | 101.15.1.5 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 | 0.80 | 73.0 | 6.13e-01 | 100.0% | 63.7% |
| 3611431 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.78 | 69.0 | 6.52e-01 | 100.0% | 85.0% |
| 3963519 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.77 | 69.0 | 6.28e-01 | 100.0% | 76.9% |
| 3716764 | 101.15.1.12 ↗ | alpha arrays › HTH › LysM domain › LysM domain › PF30403 | 0.77 | 67.0 | 6.29e-01 | 100.0% | 85.0% |
| 3970261 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.76 | 68.0 | 6.60e-01 | 100.0% | 90.7% |
| 4008890 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.75 | 64.0 | 6.23e-01 | 100.0% | 89.1% |
| 3647286 | 101.15.1.7 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM_RLK | 0.73 | 63.0 | 5.52e-01 | 100.0% | 65.3% |
| 1649977 | 101.15.1.2 ↗ | alpha arrays › HTH › LysM domain › LysM domain › OapA | 0.72 | 66.0 | 5.27e-01 | 100.0% | 54.4% |
| 3164837 | 101.15.1.2 ↗ | alpha arrays › HTH › LysM domain › LysM domain › OapA | 0.67 | 59.0 | 5.05e-01 | 100.0% | 61.3% |
| 3968457 | 101.15.1.2 ↗ | alpha arrays › HTH › LysM domain › LysM domain › OapA | 0.66 | 58.0 | 4.85e-01 | 100.0% | 57.6% |
| 3164516 | 101.15.1.2 ↗ | alpha arrays › HTH › LysM domain › LysM domain › OapA | 0.65 | 54.0 | 4.55e-01 | 100.0% | 54.1% |
| 4031038 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.65 | 54.0 | 5.16e-01 | 100.0% | 91.7% |
| 2740077 | 101.15.1.2 ↗ | alpha arrays › HTH › LysM domain › LysM domain › OapA | 0.64 | 57.0 | 4.52e-01 | 100.0% | 50.5% |
| 4944503 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.59 | 46.0 | 3.18e-01 | 100.0% | 29.3% |
| 3386481 | 3953.1.1.0 ↗ | a+b two layers › Csd3 N-terminal domain › Csd3 N-terminal domain › Csd3 N-terminal domain | 0.58 | 45.0 | 3.83e-01 | 100.0% | 49.0% |
| 3968266 | 3536.1.1.0 ↗ | a+b complex topology › Lmo1499 protein N-terminal domains › Lmo1499 protein N-terminal domains › Lmo1499 protein N-terminal domains | 0.56 | 47.0 | 3.80e-01 | 100.0% | 56.2% |
| 1512999 | 3953.1.1.0 ↗ | a+b two layers › Csd3 N-terminal domain › Csd3 N-terminal domain › Csd3 N-terminal domain | 0.55 | 43.0 | 3.68e-01 | 100.0% | 48.5% |
| 1489279 | 101.1.2.6 ↗ | alpha arrays › HTH › HTH › winged helix domain › GntR | 0.55 | 42.0 | 3.75e-01 | 91.8% | 77.5% |
| 4929738 | 6049.1.1.0 ↗ | alpha bundles › PH0832-like › PH0832-like › PH0832-like | 0.52 | 39.0 | 3.62e-01 | 91.8% | 73.3% |