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term1_saliva_scaffold_14_prodigal-single.1__X__X__00134
Bact-Virterm1_saliva_scaffold_14_prodigal-single.1__X__X__00134
Identity
- Kingdom:
- phage
Quality
91.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-25_53-92
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2v8qA01 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.65 | 48.0 | 4.38e-01 | 80.0% | 96.6% |
| 2iw5A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 49.0 | 4.17e-01 | 98.5% | 49.5% |
| 2pjpA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 41.0 | 4.28e-01 | 93.8% | 75.0% |
| 3i87A02 | 3.30.70.1710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain | 0.57 | 42.0 | 3.72e-01 | 80.0% | 98.0% |
| 3n79A01 | 3.30.70.1710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain | 0.57 | 45.0 | 4.31e-01 | 89.2% | 79.5% |
| 1w1wA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 40.0 | 2.68e-01 | 75.4% | 26.6% |
| 3uw8A02 | 1.10.420.10 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 2 › Peroxidase, domain 2 | 0.57 | 46.0 | 3.76e-01 | 93.8% | 86.6% |
| 1p4xA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 38.0 | 3.14e-01 | 95.4% | 36.2% |
| 1f7uA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.56 | 39.0 | 2.52e-01 | 73.8% | 29.4% |
| 3i4uA01 | 1.20.120.1080 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.56 | 35.0 | 3.14e-01 | 70.8% | 42.3% |
| 5yjwA00 | 3.50.50.100 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › | 0.55 | 44.0 | 2.72e-01 | 92.3% | 86.8% |
| 3lvqE02 | 1.25.40.950 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.55 | 42.0 | 4.10e-01 | 84.6% | 83.8% |
| 2dbdA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.55 | 41.0 | 3.59e-01 | 89.2% | 50.5% |
| 8fkmA01 | 3.30.1460.50 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.54 | 38.0 | 2.96e-01 | 76.9% | 42.1% |
| 3pfmA00 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.54 | 38.0 | 2.64e-01 | 75.4% | 48.1% |
| 3py8A04 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.54 | 38.0 | 2.98e-01 | 75.4% | 81.2% |
| 2pgsA03 | 1.10.3410.10 | Mainly Alpha › Orthogonal Bundle › putative deoxyguanosinetriphosphate triphosphohydrolase fold › putative deoxyguanosinetriphosphate triphosphohydrolase like domain | 0.54 | 43.0 | 3.87e-01 | 93.8% | 69.1% |
| 1qoyA00 | 1.20.1170.10 | Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › | 0.54 | 45.0 | 2.94e-01 | 95.4% | 68.0% |
| 3nwgA02 | 3.30.70.1710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain | 0.53 | 46.0 | 4.02e-01 | 98.5% | 78.2% |
| 1e69A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 38.0 | 2.61e-01 | 78.5% | 32.3% |
| 1pduA00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.53 | 45.0 | 3.15e-01 | 98.5% | 83.5% |
| 1am4A00 | 1.10.555.10 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein | 0.53 | 45.0 | 3.27e-01 | 100.0% | 65.3% |
| 4uyeA00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.53 | 45.0 | 3.88e-01 | 98.5% | 75.2% |
| 3n0vA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.53 | 42.0 | 3.95e-01 | 90.8% | 82.1% |
| 1wimA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.52 | 37.0 | 3.33e-01 | 75.4% | 63.8% |
| 3bl4A01 | 3.40.1680.10 | Alpha Beta › 3-Layer(aba) Sandwich › yp_829618.1 fold › yp_829618.1 domain like | 0.52 | 32.0 | 3.13e-01 | 92.3% | 55.6% |
| 1f3yA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.52 | 45.0 | 3.41e-01 | 100.0% | 98.2% |
| 4qjiB00 | 3.40.50.10300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like | 0.51 | 37.0 | 2.61e-01 | 76.9% | 81.9% |
| 4f3lA03 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 38.0 | 3.16e-01 | 81.5% | 75.4% |
| 1oj5A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 39.0 | 3.42e-01 | 86.2% | 73.3% |
| 2cnqA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.51 | 39.0 | 3.14e-01 | 87.7% | 87.4% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3785991 | 241.15.1.3 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › SPC25 | 0.63 | 46.0 | 4.01e-01 | 78.5% | 79.8% |
| 3173153 | 4.1.1.290 ↗ | beta barrels › SH3 › SH3 › SH3 › AD | 0.61 | 43.0 | 4.22e-01 | 75.4% | 97.1% |
| 4667615 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.59 | 43.0 | 3.60e-01 | 81.5% | 75.2% |
| 3922174 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 43.0 | 3.93e-01 | 83.1% | 90.5% |
| 4300927 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.58 | 42.0 | 3.61e-01 | 80.0% | 75.7% |
| 4946778 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 39.0 | 3.99e-01 | 93.8% | 72.3% |
| 4487427 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.57 | 42.0 | 3.47e-01 | 80.0% | 69.6% |
| 4062015 | 304.8.1.53 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › GlnD_5th | 0.57 | 42.0 | 3.25e-01 | 80.0% | 56.1% |
| 4934112 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.56 | 41.0 | 3.37e-01 | 80.0% | 93.8% |
| 4152656 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.55 | 41.0 | 2.31e-01 | 80.0% | 88.0% |
| 3249848 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.55 | 38.0 | 3.50e-01 | 70.8% | 65.9% |
| 4953123 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.55 | 44.0 | 2.71e-01 | 87.7% | 68.6% |
| 3480792 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.55 | 39.0 | 3.82e-01 | 75.4% | 87.1% |
| 4028291 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.54 | 38.0 | 2.45e-01 | 80.0% | 40.7% |
| 4610504 | 7515.1.1.2 ↗ | a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase | 0.54 | 45.0 | 2.81e-01 | 96.9% | 100.0% |
| 3974990 | 235.1.1.6 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme | 0.53 | 37.0 | 3.14e-01 | 73.8% | 55.5% |
| 8098 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.52 | 37.0 | 3.33e-01 | 75.4% | 63.8% |
| 3259718 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.52 | 36.0 | 3.11e-01 | 70.8% | 51.4% |
| 4000274 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.52 | 36.0 | 3.38e-01 | 75.4% | 67.1% |
| 3413888 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.51 | 35.0 | 3.32e-01 | 73.8% | 64.7% |
| 5058019 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.51 | 41.0 | 3.27e-01 | 92.3% | 95.1% |
| 4951993 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.50 | 42.0 | 3.27e-01 | 92.3% | 92.3% |
| 3901401 | 188.1.1.1 ↗ | alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep | 0.50 | 41.0 | 2.82e-01 | 95.4% | 73.2% |
| 3438467 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.50 | 38.0 | 3.45e-01 | 81.5% | 64.4% |
| 3341208 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.50 | 38.0 | 3.49e-01 | 81.5% | 62.4% |
| 3316017 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.50 | 37.0 | 3.47e-01 | 80.0% | 63.7% |
D2
medium
residues 26-52_93-154
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3p9xA00 | 3.40.50.170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain | 0.66 | 47.0 | 3.61e-01 | 74.2% | 45.1% |
| 2gw6A01 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.60 | 37.0 | 3.40e-01 | 100.0% | 45.7% |
| 3kenA00 | 3.40.850.10 | Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain | 0.59 | 51.0 | 3.45e-01 | 94.4% | 98.5% |
| 6z9uA01 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.59 | 30.0 | 3.11e-01 | 100.0% | 49.4% |
| 3wxmB02 | 3.30.420.60 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 | 0.59 | 48.0 | 4.29e-01 | 86.5% | 79.5% |
| 1c4pC00 | 3.10.20.180 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.58 | 44.0 | 3.91e-01 | 83.1% | 63.6% |
| 5d4wA04 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.56 | 34.0 | 3.37e-01 | 82.0% | 56.4% |
| 1r0vA01 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.56 | 28.0 | 3.00e-01 | 100.0% | 50.6% |
| 1nr4C00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.55 | 30.0 | 3.42e-01 | 97.8% | 71.2% |
| 1s3iA01 | 3.40.50.170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain | 0.53 | 47.0 | 3.60e-01 | 97.8% | 48.8% |
| 7bwfD01 | 3.40.1620.10 | Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › YefM-like domain | 0.53 | 24.0 | 3.03e-01 | 100.0% | 70.8% |
| 4iqfB01 | 3.40.50.170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain | 0.53 | 47.0 | 3.55e-01 | 97.8% | 47.6% |
| 5uaiA01 | 3.40.50.170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain | 0.52 | 46.0 | 3.50e-01 | 97.8% | 48.1% |
| 1q9jB02 | 3.30.559.30 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain | 0.52 | 44.0 | 3.47e-01 | 93.3% | 69.4% |
| 3fk5A02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.51 | 40.0 | 3.48e-01 | 100.0% | 55.0% |
| 3wxyA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.50 | 41.0 | 3.49e-01 | 100.0% | 52.6% |
| 2obdA01 | 3.15.20.10 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 2 › Bactericidal permeability-increasing protein; domain 2 | 0.50 | 39.0 | 2.76e-01 | 83.1% | 66.4% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4029261 | 321.1.1.4 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GatB_N | 0.74 | 53.0 | 3.61e-01 | 75.3% | 76.8% |
| 4139009 | 2008.1.1.6 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 | 0.64 | 46.0 | 4.21e-01 | 100.0% | 58.3% |
| 4397425 | 2008.1.1.6 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 | 0.64 | 47.0 | 4.44e-01 | 100.0% | 64.2% |
| 3971108 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.63 | 54.0 | 5.39e-01 | 100.0% | 94.4% |
| 3622016 | 2484.5.1.6 ↗ | mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › Peptidase_A17 | 0.63 | 51.0 | 4.85e-01 | 87.6% | 79.0% |
| 3391363 | 2492.1.1.36 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › ODR4-like | 0.61 | 45.0 | 3.60e-01 | 100.0% | 38.9% |
| 4315832 | 2008.1.1.6 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 | 0.60 | 42.0 | 3.91e-01 | 100.0% | 56.5% |
| 4321738 | 3585.1.1.0 ↗ | a+b two layers › DNA polymerase III C-terminal domain › DNA polymerase III C-terminal domain › DNA polymerase III C-terminal domain | 0.59 | 33.0 | 3.62e-01 | 100.0% | 64.4% |
| 4028080 | 148.1.3.8 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small | 0.59 | 37.0 | 3.65e-01 | 82.0% | 58.9% |
| 3641920 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.58 | 41.0 | 2.75e-01 | 73.0% | 54.6% |
| 4141864 | 2008.1.1.6 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 | 0.57 | 42.0 | 3.85e-01 | 100.0% | 58.8% |
| 4948111 | 4025.1.1.0 ↗ | alpha complex topology › alpha-helical domain in nickel-iron hydrogenase, large subunit › alpha-helical domain in nickel-iron hydrogenase, large subunit › alpha-helical domain in nickel-iron hydrogenase, large subunit | 0.57 | 41.0 | 3.01e-01 | 75.3% | 95.2% |
| 3832080 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.54 | 45.0 | 2.73e-01 | 91.0% | 39.7% |
| 3940192 | 245.1.1.0 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 | 0.53 | 37.0 | 3.72e-01 | 71.9% | 95.5% |
| 3395104 | 2008.2.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like | 0.53 | 43.0 | 3.79e-01 | 92.1% | 87.1% |
| 3626832 | 883.1.1.15 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP+LBP_BPI_CETP_C | 0.51 | 41.0 | 2.72e-01 | 91.0% | 94.8% |
| 3667040 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.51 | 40.0 | 3.00e-01 | 91.0% | 42.9% |
| 3221148 | 883.1.1.2 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C | 0.50 | 41.0 | 2.70e-01 | 94.4% | 93.5% |
| 3213930 | 883.1.1.1 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP | 0.50 | 35.0 | 2.86e-01 | 74.2% | 93.5% |