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term1_saliva_scaffold_14_prodigal-single.1__X__X__00172
Bact-Virterm1_saliva_scaffold_14_prodigal-single.1__X__X__00172
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-112
Domain cluster:
rep: term1_saliva_scaffold_14_prodigal-single.1__X__X__00192__D6-104
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ausC02 | 3.30.2350.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase | 0.70 | 38.0 | 3.13e-01 | 100.0% | 29.7% |
| 2apoA03 | 3.30.70.3190 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.68 | 37.0 | 4.04e-01 | 100.0% | 63.0% |
| 5mmiU01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.67 | 33.0 | 3.77e-01 | 100.0% | 62.2% |
| 1blxA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.64 | 36.0 | 3.92e-01 | 100.0% | 65.2% |
| 2iqiB00 | 3.40.50.10610 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component | 0.63 | 46.0 | 3.95e-01 | 76.4% | 50.9% |
| 2i9iA00 | 3.30.160.180 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Putative neuraminyllactose-binding hemagglutinin homolog like domain | 0.61 | 45.0 | 3.62e-01 | 77.3% | 80.5% |
| 4kwyA00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.60 | 48.0 | 4.48e-01 | 100.0% | 68.6% |
| 4nspA00 | 3.30.2170.10 | Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily | 0.56 | 47.0 | 3.73e-01 | 93.6% | 79.8% |
| 6oziB00 | 3.30.2170.10 | Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily | 0.55 | 48.0 | 3.73e-01 | 95.5% | 80.1% |
| 1w97L01 | 3.30.420.380 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.54 | 47.0 | 4.20e-01 | 95.5% | 91.6% |
| 2pd1A01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 31.0 | 3.26e-01 | 100.0% | 62.1% |
| 1vk6A02 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.54 | 39.0 | 3.73e-01 | 89.1% | 64.9% |
| 1ilyA00 | 3.30.420.100 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.54 | 41.0 | 4.43e-01 | 94.5% | 100.0% |
| 3w1eA01 | 3.30.1660.40 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › FlgT, N-terminal domain | 0.53 | 39.0 | 4.23e-01 | 100.0% | 96.7% |
| 1qexA03 | 2.60.40.1680 | Mainly Beta › Sandwich › Immunoglobulin-like › 4-oxalocrotonate tautomerase-like | 0.52 | 39.0 | 3.89e-01 | 99.1% | 78.1% |
| 3zqsA01 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.51 | 33.0 | 3.62e-01 | 94.5% | 81.8% |
| 4o8uA00 | 3.30.420.440 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF4152 | 0.50 | 42.0 | 3.39e-01 | 93.6% | 74.9% |
| 2gjvA00 | 3.30.2000.10 | Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like | 0.50 | 43.0 | 4.07e-01 | 96.4% | 87.5% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4940506 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.71 | 33.0 | 4.23e-01 | 100.0% | 75.4% |
| 4940690 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.70 | 33.0 | 4.26e-01 | 100.0% | 77.8% |
| 4647496 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.70 | 33.0 | 3.92e-01 | 100.0% | 65.3% |
| 4938351 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.66 | 31.0 | 3.83e-01 | 100.0% | 70.0% |
| 4977671 | 304.102.1.0 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase | 0.64 | 40.0 | 3.54e-01 | 100.0% | 43.1% |
| 4027263 | 4.1.1.104 ↗ | beta barrels › SH3 › SH3 › SH3 › KN17_SH3 | 0.63 | 28.0 | 2.72e-01 | 95.5% | 35.8% |
| 10331 | 7503.1.1.2 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › ABC_trans_aux | 0.62 | 45.0 | 3.91e-01 | 76.4% | 50.3% |
| 5031633 | 304.8.1.118 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › TruB_C_2 | 0.62 | 39.0 | 3.52e-01 | 100.0% | 46.0% |
| 4591715 | 304.102.1.5 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,DKCLD,TruB_C_2 | 0.62 | 38.0 | 2.98e-01 | 100.0% | 28.9% |
| 4275176 | 304.102.1.5 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,DKCLD,TruB_C_2 | 0.61 | 38.0 | 3.01e-01 | 100.0% | 30.0% |
| 4943359 | 304.102.1.13 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_C_2 | 0.61 | 38.0 | 3.00e-01 | 100.0% | 29.4% |
| 4014948 | 3385.1.1.0 ↗ | beta barrels › Allergen Alt a 1 › Allergen Alt a 1 › Allergen Alt a 1 | 0.61 | 48.0 | 5.13e-01 | 99.1% | 97.9% |
| 5019301 | 304.102.1.13 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_C_2 | 0.61 | 38.0 | 2.92e-01 | 100.0% | 27.6% |
| 5033279 | 304.102.1.4 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N | 0.60 | 38.0 | 2.95e-01 | 100.0% | 28.7% |
| 3388283 | 7503.1.1.0 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain | 0.59 | 45.0 | 4.05e-01 | 100.0% | 57.4% |
| 3664812 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.59 | 40.0 | 4.09e-01 | 88.2% | 72.4% |
| 4931484 | 304.102.1.7 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C | 0.58 | 39.0 | 3.07e-01 | 100.0% | 32.9% |
| 5063453 | 304.102.1.7 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C | 0.58 | 37.0 | 2.88e-01 | 100.0% | 29.4% |
| 3385898 | 7503.1.1.1 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › CsgG | 0.57 | 43.0 | 3.85e-01 | 80.0% | 100.0% |
| 4105672 | 3986.1.1.1 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › GTP-binding protein lepA C-terminal domain › GTP-binding protein lepA C-terminal domain › LepA_C | 0.56 | 34.0 | 3.47e-01 | 88.2% | 61.0% |
| 3842059 | 11.1.1.927 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF29951 | 0.55 | 39.0 | 3.80e-01 | 99.1% | 64.8% |
| 3499000 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.55 | 42.0 | 3.14e-01 | 82.7% | 36.9% |
| 4937776 | 2484.1.1.339 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › acVLRF1 | 0.54 | 39.0 | 4.01e-01 | 98.2% | 79.0% |
| 3708135 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.54 | 35.0 | 2.75e-01 | 100.0% | 31.9% |
| 5036917 | 304.102.1.13 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_C_2 | 0.54 | 35.0 | 3.17e-01 | 99.1% | 48.0% |
| 4978342 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.53 | 47.0 | 3.60e-01 | 96.4% | 91.2% |
| 3864913 | 218.1.1.2 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › Enolase_N | 0.53 | 39.0 | 3.51e-01 | 76.4% | 85.2% |
| 3713468 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.53 | 45.0 | 3.81e-01 | 95.5% | 96.8% |
| 3937632 | 859.1.1.0 ↗ | a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 | 0.53 | 38.0 | 3.23e-01 | 74.5% | 70.9% |
| 4126423 | 304.102.1.6 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 | 0.52 | 38.0 | 3.09e-01 | 100.0% | 39.1% |
| 4888607 | 2003.1.2.113 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Smoa_sbd | 0.52 | 36.0 | 2.76e-01 | 72.7% | 87.9% |
| 5072371 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.52 | 35.0 | 3.70e-01 | 100.0% | 77.0% |
| 4646504 | 304.102.1.4 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N | 0.51 | 38.0 | 3.13e-01 | 100.0% | 42.5% |
| 4961968 | 286.1.1.4 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase | 0.51 | 35.0 | 3.05e-01 | 70.9% | 56.1% |
| 4503008 | 304.102.1.4 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N | 0.51 | 37.0 | 3.06e-01 | 100.0% | 41.5% |
| 4034296 | 2484.1.1.6 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N | 0.51 | 44.0 | 3.38e-01 | 100.0% | 91.1% |
| 3968713 | 1.1.13.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD | 0.51 | 35.0 | 3.82e-01 | 85.5% | 86.7% |
| 4969646 | 2484.1.1.338 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › baeRF_family10 | 0.51 | 43.0 | 4.03e-01 | 98.2% | 75.6% |