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term1_saliva_scaffold_14_prodigal-single.1__X__X__00203

Bact-Vir

term1_saliva_scaffold_14_prodigal-single.1__X__X__00203

Identity

Kingdom:
phage

Quality

60.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-128
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1bm8A00 3.10.260.10 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Transcription regulator HTH, APSES-type DNA-binding domain 0.68 48.0 5.22e-01 96.7% 89.9%
1sbxA00 3.10.260.20 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Ski 0.64 48.0 5.17e-01 82.8% 90.6%
1l8rA00 3.10.260.20 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Ski 0.64 48.0 5.19e-01 82.8% 95.0%
2fwrA01 3.40.1170.30 Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › 0.56 29.0 3.79e-01 75.4% 100.0%
2ctlA00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.53 29.0 3.22e-01 100.0% 64.9%
3h36A00 1.10.10.400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain 0.52 31.0 3.74e-01 85.2% 92.3%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3968916 101.1.9.63 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N 0.79 63.0 6.80e-01 100.0% 97.1%
3163642 101.1.9.63 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N 0.70 57.0 6.01e-01 100.0% 97.3%
4033119 101.1.9.63 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N 0.66 46.0 5.01e-01 75.4% 87.0%
3525074 101.1.9.4 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno 0.66 47.0 5.35e-01 79.5% 100.0%
4003595 101.1.9.4 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno 0.65 48.0 4.74e-01 81.1% 72.1%
3893451 101.1.9.4 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno 0.65 49.0 5.21e-01 82.8% 90.5%
3480621 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.65 48.0 5.39e-01 82.8% 100.0%
3888996 101.1.9.4 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno 0.65 48.0 5.37e-01 82.8% 100.0%
3932937 101.1.9.4 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno 0.64 48.0 5.32e-01 86.9% 100.0%
4998593 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.62 44.0 4.54e-01 83.6% 77.4%
2320584 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.59 41.0 4.56e-01 76.2% 89.7%
3214527 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.57 47.0 4.75e-01 95.1% 88.0%
5044477 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 28.0 3.10e-01 87.7% 62.0%
85083 325.1.1.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › CO dehydrogenase molybdoprotein N-domain-like 0.52 28.0 3.33e-01 100.0% 81.1%
3740867 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.51 30.0 3.47e-01 100.0% 81.2%
3854647 206.1.3.41 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATPgrasp_Ter 0.51 43.0 2.73e-01 92.6% 40.6%
D2 high residues 152-280
PDB
Domain cluster: rep: IMGVR_UViG_3300000568_000096-3300000568-Draft_1006303631__D8-117
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6urtA02 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 30.0 3.57e-01 100.0% 77.3%
1vkwA01 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.55 29.0 3.06e-01 100.0% 54.5%
1repC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 28.0 3.22e-01 96.9% 72.5%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3968916 101.1.9.63 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N 0.82 64.0 7.09e-01 99.2% 100.0%
4998593 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.76 51.0 5.42e-01 80.6% 77.4%
3978692 101.1.9.143 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Virulence_RhuM 0.62 56.0 5.37e-01 97.7% 91.3%
4992480 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.56 32.0 3.63e-01 87.6% 75.6%
4061942 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.52 39.0 3.99e-01 93.0% 80.8%
4970516 2003.6.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like 0.52 34.0 3.36e-01 79.1% 59.3%
3743779 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.51 35.0 3.31e-01 70.5% 81.3%
4938741 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.51 36.0 3.54e-01 72.1% 70.7%
3640260 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.51 36.0 3.00e-01 72.1% 85.9%
4237365 223.1.1.61 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › SMP_2 0.51 36.0 3.68e-01 72.9% 82.4%
D3 high residues 394-474
PDB