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term1_saliva_scaffold_3_curated_closed_complete_prodigal-single.1__X__X__00019

Bact-Vir

term1_saliva_scaffold_3_curated_closed_complete_prodigal-single.1__X__X__00019

Identity

Kingdom:
phage

Quality

65.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-28_151-231
PDB
Domain cluster: representative
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1afsA00 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.77 68.0 4.79e-01 95.4% 92.2%
4exbB00 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.74 61.0 4.56e-01 87.2% 95.7%
1ur3M00 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.72 64.0 4.60e-01 96.3% 99.3%
4u3aB00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.66 51.0 3.74e-01 81.7% 96.9%
3aptA00 3.20.20.220 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 0.65 50.0 3.70e-01 82.6% 95.2%
2f6uA00 3.20.20.390 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › FMN-linked oxidoreductases 0.64 49.0 3.77e-01 80.7% 98.3%
1ta3A00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.63 51.0 3.81e-01 88.1% 100.0%
1qtwA00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.62 51.0 3.79e-01 89.9% 100.0%
5uckB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.61 49.0 3.61e-01 86.2% 93.4%
1vizA00 3.20.20.390 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › FMN-linked oxidoreductases 0.61 47.0 3.77e-01 83.5% 97.8%
1vhnA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.59 48.0 3.71e-01 86.2% 97.9%
1qo2A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.58 44.0 3.49e-01 80.7% 100.0%
3bwwA01 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.58 46.0 3.55e-01 85.3% 96.0%
3menB00 3.40.800.20 Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain 0.57 45.0 3.26e-01 87.2% 99.4%
5ailA00 3.40.220.10 Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 0.56 46.0 3.95e-01 89.9% 96.1%
6fu1A00 3.40.800.20 Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain 0.55 47.0 3.25e-01 94.5% 99.7%
2podA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.55 48.0 3.65e-01 95.4% 97.3%
2lleA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.55 42.0 3.29e-01 80.7% 72.6%
2pgeA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.54 42.0 3.34e-01 83.5% 97.4%
3qyqA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.54 42.0 3.16e-01 83.5% 68.1%
1gvnD00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 43.0 3.23e-01 87.2% 40.4%
1yd9B00 3.40.220.10 Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 0.53 43.0 3.65e-01 89.0% 94.7%
2bdtA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 42.0 3.61e-01 84.4% 57.9%
6z6fA01 3.40.800.20 Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain 0.53 45.0 3.20e-01 95.4% 98.4%
3a4lB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 42.0 3.59e-01 87.2% 54.5%
2v1xA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 39.0 3.18e-01 81.7% 76.4%
3nb0B02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.51 46.0 3.57e-01 100.0% 95.1%
6c6bB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 42.0 3.53e-01 90.8% 57.3%
2j16A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.51 39.0 3.68e-01 86.2% 66.2%
4gicA01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.51 37.0 3.41e-01 87.2% 57.6%
2f6rA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 40.0 3.17e-01 84.4% 56.5%
6ei9A01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.51 39.0 3.14e-01 81.7% 85.3%
2i6jA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.51 43.0 3.83e-01 93.6% 96.3%
4gp6A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 40.0 3.45e-01 85.3% 54.4%
3bq9A02 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 41.0 2.88e-01 86.2% 61.4%
4nh0B01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 38.0 2.85e-01 82.6% 57.9%
8db3B02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 39.0 3.23e-01 85.3% 80.3%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3238910 2002.1.1.13 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Aldo_ket_red 0.78 69.0 4.95e-01 95.4% 92.3%
4957755 2002.1.1.13 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Aldo_ket_red 0.77 68.0 4.94e-01 94.5% 93.6%
154798 2002.1.1.13 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Aldo_ket_red 0.73 60.0 4.50e-01 87.2% 96.9%
2756501 2002.1.1.13 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Aldo_ket_red 0.69 60.0 4.30e-01 95.4% 94.1%
4330016 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.69 58.0 4.80e-01 90.8% 100.0%
4957767 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.68 56.0 4.15e-01 89.9% 80.7%
5006605 2002.1.1.36 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Pterin_bind 0.66 55.0 4.24e-01 91.7% 87.8%
4589914 2002.1.1.16 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase 0.66 53.0 3.77e-01 87.2% 98.8%
4978576 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.66 56.0 4.14e-01 92.7% 86.3%
3604129 2002.1.1.36 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Pterin_bind 0.66 56.0 4.04e-01 92.7% 80.0%
5001728 2002.1.1.52 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Peptidase_U32 0.59 51.0 3.72e-01 96.3% 93.4%
4161177 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.56 44.0 2.83e-01 84.4% 37.5%
4152375 2002.1.1.43 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › His_biosynth 0.55 42.0 3.23e-01 81.7% 83.1%
3003998 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.54 42.0 3.33e-01 82.6% 88.2%
3701963 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 43.0 3.42e-01 86.2% 66.1%
3919946 2004.1.1.29 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.54 41.0 3.19e-01 81.7% 76.8%
4979036 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 41.0 3.25e-01 83.5% 65.7%
3362277 2004.1.1.304 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD,Helicase_C,RecQ_Zn_bind 0.52 40.0 2.66e-01 81.7% 35.5%
3164092 2004.1.1.140 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Zeta_toxin 0.52 41.0 3.85e-01 86.2% 68.9%
4982500 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 39.0 2.79e-01 81.7% 65.7%
3992143 2004.1.1.29 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.51 37.0 3.30e-01 87.2% 51.9%
None — 0.51 39.0 3.11e-01 83.5% 70.0%
4548708 2004.1.1.208 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_33 0.51 41.0 4.18e-01 88.1% 90.5%
4999744 2004.1.1.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.50 39.0 3.48e-01 85.3% 67.3%
4659910 2007.1.5.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like 0.50 36.0 3.29e-01 75.2% 85.3%
D2 medium residues 29-150
PDB
Domain cluster: representative
CATH (71)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6kikA00 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.86 81.0 6.03e-01 100.0% 48.0%
1mi3A00 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.86 81.0 5.77e-01 100.0% 49.8%
3erpA01 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.85 80.0 5.84e-01 100.0% 49.5%
4xk2B00 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.85 80.0 5.79e-01 100.0% 46.3%
5az0A00 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.85 80.0 5.72e-01 100.0% 43.8%
1exbA00 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.85 80.0 5.69e-01 100.0% 44.8%
4gieA00 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.85 80.0 5.91e-01 100.0% 44.8%
1ur3M00 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.85 80.0 5.84e-01 100.0% 49.2%
4ijrA00 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.85 80.0 5.66e-01 100.0% 49.7%
1lqaA00 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.84 79.0 5.54e-01 100.0% 50.0%
6ovqA00 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.84 78.0 5.72e-01 100.0% 47.4%
1ynpB01 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.82 77.0 5.72e-01 100.0% 48.1%
3uyiA01 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.82 76.0 5.58e-01 100.0% 46.4%
1pyfA00 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.82 76.0 5.53e-01 100.0% 44.4%
1pz1A00 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.81 76.0 5.43e-01 100.0% 41.9%
4exbB00 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.79 74.0 5.71e-01 100.0% 53.3%
3oa5B02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.75 68.0 4.79e-01 100.0% 64.4%
5vanA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.73 66.0 4.55e-01 100.0% 64.0%
7drdG01 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.72 65.0 5.05e-01 100.0% 72.5%
2aqwA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.72 65.0 4.77e-01 100.0% 47.7%
3n4fA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.72 64.0 4.97e-01 97.5% 58.9%
1b30A00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.71 65.0 4.86e-01 100.0% 74.4%
3dx5A00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.71 64.0 4.97e-01 100.0% 75.5%
2basB01 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.71 64.0 5.22e-01 100.0% 70.8%
3qllA00 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.70 64.0 5.30e-01 100.0% 72.6%
2zadA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.70 64.0 5.17e-01 100.0% 66.1%
1q6oB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.70 64.0 5.27e-01 100.0% 57.7%
3cyjA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.70 64.0 5.11e-01 100.0% 63.7%
1n7kA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.70 63.0 5.10e-01 100.0% 62.8%
1xjkA00 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.70 62.0 3.97e-01 100.0% 77.1%
1losA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.69 63.0 5.20e-01 100.0% 72.7%
4fb7A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.69 64.0 4.89e-01 100.0% 46.6%
3c6cA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.69 63.0 4.72e-01 100.0% 48.0%
1vqtA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.69 62.0 5.38e-01 100.0% 73.3%
3d0cB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.69 62.0 4.61e-01 98.4% 70.7%
1jcmP00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.69 62.0 4.86e-01 100.0% 47.5%
3atyB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.68 62.0 4.37e-01 100.0% 64.2%
2i9uA02 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.68 61.0 4.57e-01 100.0% 56.5%
3ks6A00 3.20.20.190 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase 0.68 61.0 4.84e-01 100.0% 76.0%
1f8iA00 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.67 61.0 4.18e-01 100.0% 42.6%
3b8iC00 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.67 61.0 4.62e-01 99.2% 55.0%
3kzpA00 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.67 59.0 4.80e-01 96.7% 58.9%
6uczB00 3.20.20.20 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like 0.67 61.0 4.70e-01 100.0% 58.5%
2j6vA00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.66 60.0 4.60e-01 100.0% 52.9%
2pgeA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.66 59.0 4.85e-01 100.0% 65.5%
2y7eB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.66 59.0 4.55e-01 100.0% 65.1%
3rptA00 3.20.20.40 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 1, 4-beta cellobiohydrolase 0.65 58.0 4.60e-01 98.4% 79.8%
4ovxA00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.65 58.0 4.54e-01 100.0% 74.8%
1vhcF00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.65 59.0 4.87e-01 100.0% 56.8%
4mzyA02 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.64 58.0 5.20e-01 100.0% 72.6%
1zl0B02 3.50.30.60 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › LD-carboxypeptidase A C-terminal domain-like 0.63 52.0 4.98e-01 94.3% 77.0%
2wj6A01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.60 54.0 4.53e-01 98.4% 82.4%
3kcnB00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.60 49.0 4.77e-01 95.1% 78.8%
3nl6C02 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.59 53.0 4.06e-01 100.0% 67.3%
1reqA02 3.40.50.280 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain 0.59 48.0 4.33e-01 86.9% 90.2%
2jjmA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.59 51.0 4.56e-01 98.4% 93.3%
6vlxA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 48.0 3.85e-01 91.0% 91.3%
5jd5A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.57 49.0 3.71e-01 95.9% 76.3%
6i3mE02 3.40.50.10470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Translation initiation factor eif-2b; domain 2 0.57 46.0 3.91e-01 85.2% 90.5%
4q37A00 3.40.50.280 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain 0.56 41.0 4.14e-01 91.0% 77.5%
4bmvI00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 49.0 3.94e-01 100.0% 81.5%
3fi9A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 46.0 4.39e-01 92.6% 100.0%
4ms4B02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.54 47.0 4.23e-01 100.0% 80.6%
1y7oB00 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.54 48.0 4.28e-01 100.0% 89.3%
4ms4A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 46.0 4.09e-01 100.0% 79.1%
4bgdA08 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 41.0 3.54e-01 85.2% 64.0%
5hj9A00 3.40.800.10 Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Ureohydrolase domain 0.52 46.0 3.49e-01 100.0% 70.1%
7bovA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.52 45.0 3.95e-01 99.2% 91.8%
5ahkA01 3.40.50.970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.52 44.0 3.92e-01 95.9% 89.6%
3pzlB00 3.40.800.10 Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Ureohydrolase domain 0.51 41.0 3.21e-01 89.3% 66.2%
4rxuA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.51 43.0 4.02e-01 91.0% 98.0%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1494832 2002.1.1.13 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Aldo_ket_red 0.85 80.0 5.76e-01 100.0% 45.3%
1501330 2002.1.1.13 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Aldo_ket_red 0.85 80.0 5.99e-01 100.0% 47.6%
3728251 2002.1.1.13 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Aldo_ket_red 0.84 79.0 5.68e-01 100.0% 45.9%
1169864 2002.1.1.13 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Aldo_ket_red 0.84 79.0 6.25e-01 100.0% 64.3%
1169862 2002.1.1.13 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Aldo_ket_red 0.84 78.0 5.60e-01 100.0% 44.8%
4119939 2002.1.1.13 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Aldo_ket_red 0.83 78.0 5.65e-01 100.0% 45.6%
4963878 2002.1.1.13 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Aldo_ket_red 0.82 77.0 5.67e-01 100.0% 48.3%
8704 2002.1.1.13 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Aldo_ket_red 0.82 76.0 5.53e-01 100.0% 44.4%
4957755 2002.1.1.13 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Aldo_ket_red 0.81 76.0 5.68e-01 100.0% 49.3%
4962970 2002.1.1.13 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Aldo_ket_red 0.81 76.0 5.33e-01 100.0% 42.6%
4929822 2002.1.1.13 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Aldo_ket_red 0.80 75.0 5.34e-01 100.0% 45.8%
4954274 2002.1.1.13 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Aldo_ket_red 0.80 74.0 5.76e-01 100.0% 51.6%
2820062 2002.1.1.60 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 0.73 67.0 4.87e-01 100.0% 77.8%
4984241 2002.1.1.111 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI 0.72 66.0 4.96e-01 100.0% 60.3%
4863100 2002.1.1.60 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 0.72 66.0 4.83e-01 100.0% 75.2%
3395515 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.72 65.0 5.03e-01 100.0% 61.9%
1582439 2002.1.1.174 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MR_MLE_C 0.72 64.0 4.94e-01 97.5% 57.8%
4943680 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.71 65.0 5.29e-01 100.0% 56.2%
5015916 2002.1.1.459 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PF26257 0.71 64.0 4.61e-01 100.0% 58.0%
3921250 2002.1.1.33 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_20 0.71 65.0 4.34e-01 100.0% 44.1%
4990249 2002.1.1.9 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › OMPdecase 0.71 64.0 5.36e-01 100.0% 59.5%
3780835 2002.1.1.33 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_20 0.71 64.0 4.28e-01 100.0% 41.0%
4944022 2002.1.1.9 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › OMPdecase 0.71 64.0 5.33e-01 100.0% 58.4%
5033926 2002.1.1.9 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › OMPdecase 0.71 64.0 5.16e-01 100.0% 52.3%
4997008 2002.1.1.9 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › OMPdecase 0.71 64.0 5.14e-01 100.0% 71.5%
4993078 2487.1.1.8 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › RraA-like 0.71 64.0 4.37e-01 100.0% 28.6%
4009339 2002.1.1.178 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DUF4434 0.71 63.0 4.85e-01 100.0% 62.1%
4931922 2002.1.1.441 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › RraA-like 0.70 64.0 4.36e-01 100.0% 29.3%
None — 0.70 63.0 5.15e-01 100.0% 54.8%
4971884 2002.1.1.90 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MTHFR 0.70 64.0 4.80e-01 100.0% 67.1%
3460821 2002.1.1.11 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PK 0.70 63.0 5.03e-01 100.0% 61.2%
4541672 2002.1.1.76 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DeoC 0.70 63.0 5.09e-01 100.0% 58.7%
4243347 2002.1.1.139 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › BKACE 0.68 62.0 4.75e-01 100.0% 67.3%
4557448 2002.1.1.10 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IGPS 0.68 62.0 4.83e-01 100.0% 46.9%
4295126 2002.1.1.176 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PEP_mutase 0.67 60.0 4.53e-01 97.5% 47.2%
5071418 2002.1.1.84 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MtrH 0.67 60.0 4.54e-01 100.0% 61.4%
4982125 2002.1.1.67 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Pro_dh 0.66 60.0 4.66e-01 100.0% 78.5%
4052713 2487.1.1.18 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › Peptidase_S66C 0.66 52.0 4.95e-01 94.3% 72.1%
4939087 2002.1.1.224 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › SPASM 0.66 59.0 4.77e-01 100.0% 77.1%
1144707 2002.1.1.60 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 0.65 58.0 4.54e-01 100.0% 74.8%
3959613 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.64 58.0 4.51e-01 100.0% 61.5%
3179073 2002.4.1.1 ↗ a/b barrels › TIM beta/alpha-barrel › Nicotinate/Quinolinate PRTase C-terminal domain-like › Nicotinate/Quinolinate PRTase C-terminal domain-like › NAPRTase 0.64 57.0 4.36e-01 98.4% 47.6%
3948087 2002.5.1.1 ↗ a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.64 58.0 4.71e-01 100.0% 61.3%
3510336 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.64 59.0 4.84e-01 100.0% 69.8%
5003178 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.64 57.0 4.80e-01 100.0% 80.5%
3361819 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.63 57.0 4.10e-01 100.0% 48.3%
3955092 2002.1.1.16 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase 0.63 57.0 4.37e-01 100.0% 78.9%
5045512 7570.1.1.0 ↗ a/b three-layered sandwiches › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain 0.62 47.0 4.52e-01 87.7% 70.0%
4988971 7545.1.1.1 ↗ a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DsrE 0.62 44.0 4.74e-01 94.3% 90.0%
4516732 2003.6.1.3 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › HK 0.61 55.0 4.30e-01 100.0% 75.8%
3336896 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.61 55.0 4.60e-01 100.0% 74.8%
4942035 7512.1.1.31 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_4_4 0.59 52.0 4.64e-01 98.4% 93.1%
3918235 2003.1.1.3 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short 0.59 52.0 3.88e-01 100.0% 84.3%
3189856 2003.1.1.42 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_2 0.58 52.0 4.67e-01 100.0% 95.4%
3273866 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.58 51.0 3.46e-01 100.0% 38.4%
4968031 2007.1.3.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.56 47.0 4.56e-01 91.0% 86.4%
4014370 7579.1.1.0 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.56 47.0 3.66e-01 92.6% 94.7%
5023554 2007.1.9.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) › AIRC 0.56 47.0 3.91e-01 91.8% 55.9%
3374911 2003.1.1.42 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_2 0.56 50.0 4.34e-01 100.0% 81.5%
3280335 7579.1.1.44 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_6 0.55 48.0 4.18e-01 97.5% 92.8%
4969648 2007.1.9.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) › AIRC 0.55 46.0 4.47e-01 91.8% 87.9%
4930497 2007.1.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.54 44.0 4.46e-01 97.5% 86.4%
5037052 7512.1.1.8 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Epimerase_2 0.54 48.0 4.13e-01 98.4% 93.3%
3968240 2003.1.1.42 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_2 0.54 48.0 4.37e-01 99.2% 93.9%
3387124 7522.1.1.4 ↗ a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like › PFOR_II 0.52 36.0 3.77e-01 71.3% 86.0%
3303560 2006.1.1.6 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Acid_phosphat_B 0.51 45.0 3.69e-01 95.9% 66.2%
3931396 2003.1.1.3 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short 0.51 45.0 3.48e-01 100.0% 63.4%
2628170 7512.1.1.0 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.51 43.0 3.89e-01 95.1% 99.4%
4045588 2004.1.1.507 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD, Helicase_C, RecG_dom3_C 0.50 44.0 2.99e-01 100.0% 69.9%
3587705 2003.1.1.22 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GFO_IDH_MocA 0.50 42.0 4.09e-01 91.0% 94.8%
D3 medium residues 324-377
PDB