←Back to structures

term1_saliva_scaffold_3_curated_closed_complete_prodigal-single.1__X__X__00022

Bact-Vir

term1_saliva_scaffold_3_curated_closed_complete_prodigal-single.1__X__X__00022

Identity

Kingdom:
phage

Quality

88.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-100
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.59 21.0 3.08e-01 71.7% 68.8%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.58 26.0 3.20e-01 92.9% 65.1%
4e1pA00 3.30.60.230 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain 0.53 24.0 2.90e-01 79.8% 63.6%
1pvgA01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.51 42.0 3.24e-01 92.9% 65.6%
3rkxA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.51 40.0 3.20e-01 85.9% 68.5%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3343334 101.1.2.98 ↗ alpha arrays › HTH › HTH › winged helix domain › CDT1 0.62 33.0 2.97e-01 81.8% 34.5%
3334401 101.1.2.566 ↗ alpha arrays › HTH › HTH › winged helix domain › CDT1, CDT1_C 0.60 33.0 2.44e-01 82.8% 19.0%
3728856 171.1.1.9 ↗ alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3, Ribonucleas_3_3 0.55 44.0 3.42e-01 86.9% 64.9%
5047069 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 36.0 2.79e-01 99.0% 29.1%
3734626 171.1.1.1 ↗ alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 0.53 43.0 3.36e-01 86.9% 66.4%
4609849 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.53 37.0 3.93e-01 91.9% 81.1%
4898997 3121.1.1.1 ↗ a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA 0.51 23.0 2.68e-01 70.7% 55.6%
D2 medium residues 115-146
PDB
Domain cluster: representative