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term1_saliva_scaffold_3_curated_closed_complete_prodigal-single.1__X__X__00038
Bact-Virterm1_saliva_scaffold_3_curated_closed_complete_prodigal-single.1__X__X__00038
Identity
- Kingdom:
- phage
Quality
63.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-76
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1qnaA01 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.69 | 52.0 | 4.79e-01 | 80.8% | 84.9% |
| 2mj7A00 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.67 | 57.0 | 4.64e-01 | 95.9% | 73.8% |
| 2ysiA01 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.67 | 29.0 | 3.90e-01 | 75.3% | 84.8% |
| 3le4A00 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.62 | 30.0 | 3.42e-01 | 71.2% | 60.0% |
| 2ofhX00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 47.0 | 4.84e-01 | 82.2% | 88.7% |
| 6mjjC01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 44.0 | 3.77e-01 | 74.0% | 64.9% |
| 1tuaA01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.61 | 46.0 | 4.44e-01 | 82.2% | 95.2% |
| 4mbrA01 | 2.60.40.1280 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.60 | 46.0 | 3.71e-01 | 83.6% | 46.7% |
| 3dpuB03 | 3.30.310.200 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.60 | 52.0 | 4.64e-01 | 98.6% | 82.4% |
| 7qu9A01 | 3.60.120.10 | Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase | 0.59 | 42.0 | 2.68e-01 | 79.5% | 37.2% |
| 4gc1A01 | 2.90.10.10 | Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain | 0.58 | 45.0 | 4.04e-01 | 83.6% | 74.0% |
| 2wiqA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.58 | 43.0 | 3.06e-01 | 79.5% | 49.8% |
| 3axbA02 | 3.30.9.10 | Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 | 0.58 | 50.0 | 3.84e-01 | 98.6% | 88.3% |
| 5cq2A02 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.58 | 33.0 | 4.07e-01 | 76.7% | 95.3% |
| 2qcuA02 | 3.30.9.10 | Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 | 0.58 | 50.0 | 3.93e-01 | 100.0% | 85.7% |
| 4mboA01 | 2.60.40.1280 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 43.0 | 3.45e-01 | 83.6% | 45.7% |
| 3frnA01 | 3.10.129.70 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › | 0.56 | 41.0 | 3.36e-01 | 78.1% | 43.2% |
| 3c5mA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.56 | 42.0 | 2.62e-01 | 79.5% | 96.5% |
| 4hb9A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.55 | 47.0 | 3.08e-01 | 100.0% | 49.9% |
| 2kr0A01 | 2.30.29.70 | Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 | 0.55 | 40.0 | 3.46e-01 | 76.7% | 77.9% |
| 4bpnW02 | 2.40.50.740 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain | 0.55 | 29.0 | 3.38e-01 | 82.2% | 72.5% |
| 2dtcA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 40.0 | 3.40e-01 | 78.1% | 81.9% |
| 3j7aF02 | 2.40.50.740 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain | 0.54 | 29.0 | 3.36e-01 | 83.6% | 74.5% |
| 1nh8A03 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 39.0 | 4.06e-01 | 78.1% | 86.6% |
| 2la7A01 | 2.40.128.270 | Mainly Beta › Beta Barrel › Lipocalin › | 0.54 | 39.0 | 3.29e-01 | 78.1% | 96.9% |
| 1lf7A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.53 | 44.0 | 3.47e-01 | 94.5% | 73.2% |
| 2p0hA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 36.0 | 3.08e-01 | 72.6% | 80.5% |
| 2z1pA01 | 2.60.40.1280 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 37.0 | 3.13e-01 | 79.5% | 71.5% |
| 1gxrA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.50 | 43.0 | 2.85e-01 | 100.0% | 58.5% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3217609 | 64.1.1.1 ↗ | beta meanders › WW domain-like › WW domain › WW domain › WW | 0.70 | 31.0 | 3.91e-01 | 76.7% | 69.8% |
| 4985176 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.69 | 52.0 | 4.60e-01 | 82.2% | 82.7% |
| 5051706 | 331.1.1.1 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP | 0.69 | 53.0 | 4.80e-01 | 83.6% | 76.0% |
| 5054463 | 331.1.1.1 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP | 0.68 | 52.0 | 4.76e-01 | 82.2% | 76.8% |
| 3403199 | 331.1.1.1 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP | 0.67 | 53.0 | 4.65e-01 | 86.3% | 70.9% |
| 3173796 | 331.1.1.5 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N | 0.66 | 50.0 | 4.79e-01 | 80.8% | 98.8% |
| 4174949 | 331.1.1.1 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP | 0.66 | 51.0 | 4.78e-01 | 83.6% | 82.2% |
| 3415773 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.66 | 50.0 | 4.70e-01 | 82.2% | 81.1% |
| 1646641 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.65 | 49.0 | 4.31e-01 | 82.2% | 78.2% |
| 3502130 | 327.11.2.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_6 | 0.64 | 49.0 | 4.15e-01 | 83.6% | 75.2% |
| 4968206 | 331.1.1.1 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP | 0.64 | 49.0 | 4.68e-01 | 82.2% | 89.4% |
| 5022991 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.63 | 49.0 | 4.59e-01 | 83.6% | 80.0% |
| 3927583 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.63 | 48.0 | 4.50e-01 | 82.2% | 98.9% |
| 4929392 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.63 | 48.0 | 4.52e-01 | 83.6% | 87.8% |
| 3199398 | 331.19.1.3 ↗ | a+b two layers › TBP-like › Toxin RnlA N-terminal domains › Toxin RnlA N-terminal domains › CPSF73-100_C | 0.63 | 48.0 | 4.68e-01 | 82.2% | 97.5% |
| 4668665 | 331.2.1.8 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › CPSF73-100_C | 0.62 | 47.0 | 4.45e-01 | 82.2% | 92.2% |
| 3219936 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.62 | 46.0 | 2.88e-01 | 76.7% | 94.3% |
| 5031724 | 331.2.1.0 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain | 0.61 | 44.0 | 4.17e-01 | 76.7% | 93.3% |
| 4024018 | 327.11.2.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_6 | 0.61 | 44.0 | 3.73e-01 | 78.1% | 75.4% |
| 4935597 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.60 | 53.0 | 3.35e-01 | 100.0% | 40.3% |
| 3897305 | 6129.1.1.1 ↗ | beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD | 0.59 | 45.0 | 3.21e-01 | 82.2% | 73.9% |
| 3565087 | 6129.1.1.1 ↗ | beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD | 0.58 | 42.0 | 3.17e-01 | 76.7% | 90.8% |
| 3908315 | 898.1.1.1 ↗ | a+b two layers › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › Ribosomal_L1 | 0.57 | 42.0 | 3.57e-01 | 82.2% | 49.2% |
| 3249571 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 41.0 | 3.85e-01 | 79.5% | 77.9% |
| 3964676 | 244.1.1.4 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › DAO | 0.56 | 48.0 | 4.00e-01 | 98.6% | 88.1% |
| 3874056 | 64.1.1.1 ↗ | beta meanders › WW domain-like › WW domain › WW domain › WW | 0.55 | 34.0 | 3.83e-01 | 100.0% | 81.8% |
| 2323730 | 9.1.1.4 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › META | 0.55 | 38.0 | 3.26e-01 | 74.0% | 97.6% |
| 3389752 | 898.1.1.1 ↗ | a+b two layers › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › Ribosomal_L1 | 0.53 | 39.0 | 3.33e-01 | 80.8% | 46.9% |
| 1843010 | 331.19.1.1 ↗ | a+b two layers › TBP-like › Toxin RnlA N-terminal domains › Toxin RnlA N-terminal domains › RnlA_toxin | 0.53 | 39.0 | 3.79e-01 | 78.1% | 97.5% |
| 3620912 | 898.1.1.0 ↗ | a+b two layers › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 | 0.53 | 39.0 | 3.27e-01 | 82.2% | 48.6% |
| 3619647 | 390.1.1.1 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 | 0.53 | 36.0 | 3.29e-01 | 79.5% | 52.0% |
| 3803938 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.53 | 32.0 | 3.20e-01 | 71.2% | 58.7% |
| 3804566 | 898.1.1.1 ↗ | a+b two layers › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › Ribosomal_L1 | 0.52 | 39.0 | 3.34e-01 | 82.2% | 48.5% |
| 3973757 | 9.1.1.11 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_2 | 0.52 | 42.0 | 3.39e-01 | 94.5% | 83.7% |
| 3214659 | 898.1.1.1 ↗ | a+b two layers › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › Ribosomal_L1 | 0.52 | 38.0 | 3.31e-01 | 82.2% | 54.4% |
| 3798068 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.51 | 41.0 | 2.95e-01 | 89.0% | 53.8% |
| 5075316 | 330.7.1.0 ↗ | a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain | 0.51 | 35.0 | 3.57e-01 | 71.2% | 100.0% |
| 5034643 | 9.23.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 | 0.51 | 37.0 | 3.47e-01 | 76.7% | 98.9% |
| 3939107 | 898.1.1.0 ↗ | a+b two layers › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 | 0.50 | 37.0 | 3.25e-01 | 82.2% | 54.4% |
| 3618023 | 5.1.3.7 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › NHL | 0.50 | 42.0 | 2.92e-01 | 98.6% | 56.6% |
| 5033395 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.50 | 35.0 | 3.50e-01 | 76.7% | 70.7% |
| 4947543 | 330.7.1.2 ↗ | a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin | 0.50 | 34.0 | 3.45e-01 | 71.2% | 94.6% |
| 3720028 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.50 | 36.0 | 3.19e-01 | 78.1% | 77.4% |
D2
high
residues 85-180