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term1_saliva_scaffold_3_curated_closed_complete_prodigal-single.1__X__X__00042
Bact-Virterm1_saliva_scaffold_3_curated_closed_complete_prodigal-single.1__X__X__00042
Identity
- Kingdom:
- phage
Quality
73.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 153-232
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3djwA00 | 3.30.160.300 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.64 | 40.0 | 3.82e-01 | 73.8% | 52.6% |
| 1o8vA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.63 | 35.0 | 2.96e-01 | 77.5% | 31.6% |
| 4ep4A00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.62 | 46.0 | 3.60e-01 | 87.5% | 38.0% |
| 2f96A00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.61 | 45.0 | 3.36e-01 | 77.5% | 94.5% |
| 5ekaA00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.61 | 31.0 | 3.07e-01 | 100.0% | 45.9% |
| 3e8tA00 | 3.15.10.30 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › TULIP domain | 0.61 | 45.0 | 3.34e-01 | 80.0% | 63.4% |
| 4hgzA02 | 2.20.25.570 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.58 | 36.0 | 3.95e-01 | 76.2% | 81.7% |
| 1ul7A00 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.58 | 39.0 | 3.61e-01 | 78.8% | 54.9% |
| 1gyvA00 | 2.60.40.1230 | Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain | 0.56 | 49.0 | 4.31e-01 | 97.5% | 89.2% |
| 3r87A00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.56 | 43.0 | 3.70e-01 | 85.0% | 98.5% |
| 2x0qA01 | 3.30.310.280 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.55 | 37.0 | 3.20e-01 | 97.5% | 42.1% |
| 4kghA00 | 3.15.10.10 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 | 0.55 | 44.0 | 3.41e-01 | 90.0% | 63.7% |
| 8aimG01 | 3.10.450.20 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor | 0.55 | 39.0 | 3.90e-01 | 87.5% | 74.1% |
| 4h5bA00 | 3.30.1460.70 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.54 | 46.0 | 3.88e-01 | 100.0% | 67.1% |
| 2wxwA01 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.54 | 36.0 | 2.98e-01 | 86.3% | 35.4% |
| 4n4bA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.54 | 46.0 | 3.17e-01 | 100.0% | 78.1% |
| 3uoaB02 | 2.60.40.3360 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 46.0 | 3.95e-01 | 98.8% | 85.3% |
| 1jmxA02 | 2.40.128.120 | Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 | 0.53 | 46.0 | 4.19e-01 | 98.8% | 86.2% |
| 3mnmA00 | 2.60.40.1230 | Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain | 0.53 | 46.0 | 4.20e-01 | 100.0% | 92.9% |
| 1m2xA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.53 | 43.0 | 3.24e-01 | 92.5% | 92.2% |
| 1b7tA02 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.52 | 30.0 | 3.44e-01 | 90.0% | 82.7% |
| 1lshA01 | 2.30.230.10 | Mainly Beta › Roll › Lipovitellin-phosvitin complex; beta-sheet shell regions › Lipovitellin; beta-sheet shell regions, chain A | 0.52 | 44.0 | 3.18e-01 | 100.0% | 85.2% |
| 3lhnA00 | 2.40.128.640 | Mainly Beta › Beta Barrel › Lipocalin › | 0.51 | 43.0 | 3.92e-01 | 93.8% | 77.6% |
| 1zhxA03 | 2.40.160.120 | Mainly Beta › Beta Barrel › Porin › | 0.51 | 38.0 | 2.97e-01 | 82.5% | 39.8% |
| 1lkfA00 | 2.70.240.10 | Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA | 0.51 | 44.0 | 3.05e-01 | 100.0% | 91.8% |
| 3pg4A00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.50 | 42.0 | 3.12e-01 | 96.2% | 90.4% |
| 6t5kC00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.50 | 43.0 | 3.15e-01 | 96.2% | 88.8% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3940149 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.66 | 51.0 | 4.97e-01 | 100.0% | 75.6% |
| 3890275 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.63 | 47.0 | 4.64e-01 | 100.0% | 73.9% |
| 3225768 | 883.1.1.0 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like | 0.63 | 47.0 | 3.68e-01 | 80.0% | 50.0% |
| 3303119 | 9.23.1.4 ↗ | beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › PAP_fibrillin | 0.63 | 48.0 | 4.14e-01 | 85.0% | 79.1% |
| 3842458 | 883.1.1.1 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP | 0.60 | 44.0 | 3.51e-01 | 78.8% | 58.2% |
| 3512572 | 220.1.1.125 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_PLEKHM2 | 0.59 | 37.0 | 3.09e-01 | 92.5% | 35.2% |
| 3622016 | 2484.5.1.6 ↗ | mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › Peptidase_A17 | 0.58 | 43.0 | 4.03e-01 | 88.7% | 61.0% |
| 3628252 | 2484.1.1.50 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Dimer_Tnp_hAT | 0.58 | 52.0 | 3.33e-01 | 97.5% | 89.9% |
| 3683603 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.58 | 51.0 | 3.18e-01 | 100.0% | 79.4% |
| 3586348 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.58 | 52.0 | 3.32e-01 | 97.5% | 91.1% |
| 3531333 | 220.1.1.35 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › IQ_SEC7_PH | 0.58 | 41.0 | 3.34e-01 | 93.8% | 37.0% |
| 3409847 | 883.1.1.3 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › JHBP | 0.58 | 46.0 | 3.32e-01 | 86.3% | 61.3% |
| 3271656 | 11.8.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Osmotin-like › Osmotin-like | 0.57 | 45.0 | 3.23e-01 | 100.0% | 27.6% |
| 3339690 | 9.23.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 | 0.55 | 45.0 | 3.85e-01 | 91.3% | 57.8% |
| 3991749 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.55 | 49.0 | 3.58e-01 | 100.0% | 51.6% |
| 3973881 | 883.1.1.0 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like | 0.55 | 40.0 | 3.42e-01 | 78.8% | 61.4% |
| 3440368 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.55 | 40.0 | 2.68e-01 | 100.0% | 18.0% |
| 3929583 | 883.1.1.0 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like | 0.55 | 40.0 | 3.09e-01 | 78.8% | 49.5% |
| 3828471 | 9.23.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 | 0.55 | 44.0 | 3.80e-01 | 91.3% | 58.2% |
| 3217527 | 883.1.1.1 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP | 0.54 | 39.0 | 3.08e-01 | 78.8% | 50.3% |
| 4003694 | 2484.1.1.50 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Dimer_Tnp_hAT | 0.54 | 48.0 | 3.08e-01 | 100.0% | 91.9% |
| 3742845 | 11.1.1.44 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Alpha_adaptinC2 | 0.54 | 47.0 | 4.20e-01 | 100.0% | 89.8% |
| 3339625 | 9.1.1.34 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › PAP_fibrillin | 0.54 | 44.0 | 3.41e-01 | 90.0% | 42.2% |
| 3394267 | 883.1.1.3 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › JHBP | 0.54 | 41.0 | 3.04e-01 | 85.0% | 46.7% |
| 5004539 | 883.1.1.0 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like | 0.54 | 39.0 | 3.16e-01 | 77.5% | 56.4% |
| 5044008 | 2484.1.1.136 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutL | 0.53 | 43.0 | 3.50e-01 | 87.5% | 97.3% |
| 140559 | 11.1.1.44 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Alpha_adaptinC2 | 0.53 | 46.0 | 4.20e-01 | 100.0% | 92.9% |
| 3646333 | 9.1.1.34 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › PAP_fibrillin | 0.53 | 42.0 | 3.29e-01 | 90.0% | 49.2% |
| 3784292 | 247.1.1.0 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase | 0.53 | 43.0 | 3.13e-01 | 96.2% | 96.0% |
| 3289004 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.53 | 37.0 | 3.04e-01 | 73.8% | 42.7% |
| 3495055 | 5087.2.1.2 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1N › Lipovitellin LV-1N › PF29934 | 0.53 | 45.0 | 3.21e-01 | 98.8% | 84.8% |
| 3665234 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.52 | 38.0 | 3.26e-01 | 83.7% | 47.7% |
| 3717828 | 5.1.5.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 | 0.52 | 44.0 | 2.52e-01 | 92.5% | 12.1% |
| 3421076 | 5.1.3.142 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like | 0.52 | 43.0 | 2.94e-01 | 93.8% | 28.2% |
| 3280614 | 4295.1.1.2 ↗ | beta barrels › Acetoacetate decarboxylase-like › Acetoacetate decarboxylase-like › Acetoacetate decarboxylase-like › DUF2071 | 0.52 | 41.0 | 3.01e-01 | 90.0% | 96.3% |
| 3806012 | 5.1.3.67 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 | 0.51 | 42.0 | 2.88e-01 | 96.2% | 44.1% |
| None | — | 0.51 | 42.0 | 2.50e-01 | 96.2% | 15.7% | |
| 3926560 | 2484.1.1.212 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RT_RNaseH | 0.51 | 40.0 | 3.48e-01 | 92.5% | 53.3% |
| 3601428 | 883.1.1.0 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like | 0.50 | 41.0 | 2.65e-01 | 91.3% | 34.8% |
| 3736649 | 883.1.1.0 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like | 0.50 | 36.0 | 2.77e-01 | 76.2% | 44.8% |
D2
medium
residues 43-127