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term1_saliva_scaffold_3_curated_closed_complete_prodigal-single.1__X__X__00090

Bact-Vir

term1_saliva_scaffold_3_curated_closed_complete_prodigal-single.1__X__X__00090

Identity

Kingdom:
phage

Quality

88.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 44-109
PDB
Domain cluster: representative
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wquA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.69 45.0 3.82e-01 98.5% 39.5%
2cs0A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.67 47.0 4.17e-01 100.0% 50.5%
1wxrA03 3.30.160.280 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.66 49.0 4.71e-01 100.0% 68.4%
6wo0A01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.64 47.0 3.27e-01 78.8% 54.0%
1lwuC01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.63 44.0 3.46e-01 100.0% 32.5%
1luiA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.61 46.0 3.98e-01 100.0% 50.9%
2pvzB01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.60 47.0 3.44e-01 89.4% 49.0%
2og4A01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.60 52.0 3.60e-01 100.0% 33.2%
3g7kA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.60 48.0 3.54e-01 90.9% 51.9%
3li9A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 41.0 3.37e-01 75.8% 41.9%
2pbfA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 50.0 3.51e-01 100.0% 62.4%
3ntkA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 38.0 3.63e-01 86.4% 57.5%
2i9yA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 38.0 2.98e-01 92.4% 29.9%
1ekjA00 3.40.1050.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase 0.56 42.0 3.00e-01 81.8% 80.5%
2znrA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.56 46.0 3.57e-01 100.0% 84.8%
1pvgA01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.56 46.0 3.22e-01 97.0% 48.4%
6iouA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 39.0 3.40e-01 77.3% 47.3%
1f89A00 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.55 47.0 3.20e-01 100.0% 26.9%
3d37B01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.55 48.0 3.59e-01 100.0% 48.3%
3q6aB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 38.0 3.15e-01 95.5% 37.3%
3a32A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.55 44.0 3.58e-01 93.9% 72.3%
1k28D03 2.40.30.150 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 0.54 47.0 4.23e-01 100.0% 91.6%
6zbsA02 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.54 43.0 3.13e-01 90.9% 50.5%
8d3mI01 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.54 42.0 3.03e-01 87.9% 29.5%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 38.0 3.34e-01 84.8% 49.0%
3h4rA00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.53 39.0 2.84e-01 80.3% 68.5%
6yllA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 38.0 3.59e-01 75.8% 98.8%
1t62B00 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.53 46.0 3.53e-01 100.0% 76.1%
2bghA02 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.52 41.0 3.02e-01 90.9% 49.0%
3s9xA00 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.52 46.0 3.50e-01 100.0% 78.6%
4on1A01 2.40.128.470 Mainly Beta › Beta Barrel › Lipocalin › 0.52 43.0 3.53e-01 100.0% 48.2%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 39.0 3.70e-01 95.5% 70.0%
1q7hA02 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.51 43.0 4.06e-01 100.0% 82.6%
2gksB01 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.51 43.0 3.49e-01 100.0% 90.1%
4hj1A01 2.60.98.50 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › 0.51 42.0 3.20e-01 95.5% 61.4%
4ic1D00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.50 39.0 2.84e-01 89.4% 28.2%
4exoA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 38.0 3.04e-01 97.0% 38.4%
2p0wA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.50 35.0 2.83e-01 74.2% 50.4%
3weeB03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.50 34.0 2.94e-01 72.7% 68.7%
1sqwA02 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.50 43.0 4.04e-01 100.0% 86.7%
5zveA02 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.50 43.0 4.00e-01 100.0% 83.7%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3890372 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.71 51.0 4.34e-01 100.0% 46.4%
3477642 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.69 50.0 4.11e-01 100.0% 42.5%
3624597 214.1.1.9 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7063 0.68 48.0 4.19e-01 100.0% 49.0%
3514344 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.68 49.0 4.11e-01 100.0% 44.3%
4278184 4.1.1.52 ↗ beta barrels › SH3 › SH3 › SH3 › ZapC_C 0.68 44.0 4.20e-01 78.8% 56.2%
3220873 214.1.1.9 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7063 0.67 47.0 4.13e-01 100.0% 49.0%
3625308 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.66 46.0 3.79e-01 100.0% 39.2%
4957682 66.1.1.1 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.66 39.0 3.41e-01 77.3% 36.9%
3637664 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.65 43.0 3.56e-01 90.9% 37.5%
4196537 4.1.1.52 ↗ beta barrels › SH3 › SH3 › SH3 › ZapC_C 0.65 43.0 4.16e-01 78.8% 60.0%
3629830 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.65 43.0 3.98e-01 97.0% 52.9%
3386292 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.65 43.0 3.78e-01 77.3% 45.0%
3547106 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.64 43.0 3.92e-01 97.0% 51.1%
3235708 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.64 45.0 3.93e-01 100.0% 49.0%
5038834 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.64 46.0 3.70e-01 100.0% 37.7%
3875076 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.63 50.0 3.89e-01 100.0% 39.3%
3535755 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.63 49.0 3.89e-01 100.0% 40.7%
4144942 70.3.1.12 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like › PF30644 0.62 45.0 4.17e-01 77.3% 90.6%
3765274 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 42.0 3.81e-01 97.0% 51.1%
3610562 2492.1.1.11 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › NPL4 0.62 55.0 3.79e-01 100.0% 46.0%
3936496 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 45.0 3.99e-01 93.9% 52.0%
5038531 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.61 43.0 4.41e-01 74.2% 89.2%
5038766 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.61 44.0 4.11e-01 75.8% 96.2%
3920666 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.61 41.0 3.74e-01 84.8% 52.2%
3627842 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 43.0 3.92e-01 97.0% 55.6%
3521346 2007.1.2.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.60 44.0 3.26e-01 100.0% 28.6%
3577224 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.60 42.0 3.88e-01 97.0% 55.6%
3620905 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.59 40.0 3.61e-01 84.8% 51.1%
4257969 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 49.0 3.94e-01 90.9% 63.6%
4978781 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.59 51.0 3.83e-01 100.0% 39.4%
3407827 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.59 39.0 3.58e-01 84.8% 52.9%
325960 286.1.1.3 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PrpF 0.58 48.0 3.59e-01 95.5% 55.2%
3940730 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 43.0 3.87e-01 97.0% 55.8%
5001719 1.1.9.50 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF28530 0.58 51.0 4.28e-01 100.0% 68.7%
5037760 7528.1.1.0 ↗ a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains 0.58 49.0 3.88e-01 97.0% 80.0%
3511337 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.58 42.0 3.82e-01 97.0% 56.7%
3391363 2492.1.1.36 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › ODR4-like 0.58 48.0 3.62e-01 97.0% 87.2%
3222051 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 39.0 3.99e-01 97.0% 72.3%
3547102 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.58 41.0 3.81e-01 97.0% 58.8%
3940729 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 43.0 4.00e-01 86.4% 63.5%
4973665 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 41.0 3.83e-01 78.8% 75.3%
4928178 1.1.9.6 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › UPF0113 0.56 49.0 3.67e-01 100.0% 82.9%
4317035 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.56 39.0 3.63e-01 97.0% 56.5%
3484057 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.56 46.0 3.60e-01 100.0% 89.4%
4949071 869.1.1.1 ↗ a+b complex topology › Methenyltetrahydromethanopterin cyclohydrolase › Methenyltetrahydromethanopterin cyclohydrolase › Methenyltetrahydromethanopterin cyclohydrolase › MCH 0.56 45.0 3.12e-01 100.0% 62.8%
3913334 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 39.0 3.90e-01 89.4% 71.4%
3881119 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.55 36.0 3.42e-01 97.0% 55.0%
4522026 3585.1.1.0 ↗ a+b two layers › DNA polymerase III C-terminal domain › DNA polymerase III C-terminal domain › DNA polymerase III C-terminal domain 0.55 35.0 3.61e-01 77.3% 67.7%
3936468 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 39.0 3.45e-01 93.9% 51.0%
4611006 3585.1.1.0 ↗ a+b two layers › DNA polymerase III C-terminal domain › DNA polymerase III C-terminal domain › DNA polymerase III C-terminal domain 0.54 36.0 3.59e-01 78.8% 65.2%
3547093 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.54 38.0 3.42e-01 83.3% 53.3%
3357660 206.1.1.20 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.54 41.0 2.68e-01 87.9% 56.1%
3989407 3585.1.1.0 ↗ a+b two layers › DNA polymerase III C-terminal domain › DNA polymerase III C-terminal domain › DNA polymerase III C-terminal domain 0.54 35.0 3.59e-01 78.8% 69.2%
3883159 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.54 37.0 3.43e-01 97.0% 54.4%
3609629 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.53 38.0 3.38e-01 86.4% 51.6%
3547084 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.53 35.0 3.22e-01 97.0% 48.9%
4002896 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.53 37.0 3.38e-01 97.0% 54.4%
4932684 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.52 45.0 4.37e-01 100.0% 92.0%
144031 1.1.9.35 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF30643 0.52 46.0 3.50e-01 100.0% 78.6%
4647050 1.1.13.56 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › YQBQ 0.52 44.0 4.20e-01 100.0% 91.3%
4960194 2008.1.1.59 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.52 41.0 2.80e-01 89.4% 24.9%
5053690 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.52 43.0 3.44e-01 100.0% 93.5%
4958559 1.1.9.6 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › UPF0113 0.52 44.0 4.23e-01 98.5% 85.0%
4954540 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.51 45.0 3.82e-01 100.0% 92.7%
3814411 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.51 38.0 3.37e-01 86.4% 53.3%
3886687 1.1.9.6 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › UPF0113 0.51 43.0 3.95e-01 100.0% 80.0%
3905549 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.50 39.0 3.35e-01 84.8% 52.4%
4993437 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.50 39.0 3.10e-01 86.4% 81.2%