←Back to structures
term1_saliva_scaffold_3_curated_closed_complete_prodigal-single.1__X__X__00095
Bact-Virterm1_saliva_scaffold_3_curated_closed_complete_prodigal-single.1__X__X__00095
Identity
- Kingdom:
- phage
Quality
67.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 23-88
Domain cluster:
representative
CATH (40)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gfaB01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.77 | 59.0 | 6.10e-01 | 97.0% | 85.5% |
| 3j7aF03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.74 | 56.0 | 5.46e-01 | 97.0% | 74.6% |
| 6az1E03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.73 | 55.0 | 5.36e-01 | 97.0% | 73.6% |
| 3m9qA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.72 | 66.0 | 6.42e-01 | 100.0% | 91.7% |
| 2p4tA00 | 2.30.30.60 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 56.0 | 5.93e-01 | 100.0% | 94.8% |
| 3askA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 58.0 | 5.95e-01 | 100.0% | 95.2% |
| 3urgA02 | 2.30.30.530 | Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain | 0.69 | 55.0 | 5.66e-01 | 97.0% | 93.7% |
| 8jx6A02 | 2.30.30.780 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 54.0 | 4.76e-01 | 89.4% | 100.0% |
| 3a5zB01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 52.0 | 5.38e-01 | 100.0% | 92.1% |
| 4iupA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 57.0 | 5.59e-01 | 100.0% | 87.5% |
| 1a15A00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.65 | 39.0 | 3.93e-01 | 89.4% | 59.7% |
| 1w4sA00 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.64 | 58.0 | 4.46e-01 | 100.0% | 53.4% |
| 4aw8A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.64 | 54.0 | 4.00e-01 | 97.0% | 68.8% |
| 1e0bA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.64 | 43.0 | 4.46e-01 | 84.8% | 75.4% |
| 2wbfX00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.63 | 54.0 | 3.66e-01 | 100.0% | 37.0% |
| 1uebA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 49.0 | 5.03e-01 | 100.0% | 90.5% |
| 3oyyA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 50.0 | 5.03e-01 | 100.0% | 87.9% |
| 6s8zA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 49.0 | 5.06e-01 | 100.0% | 93.5% |
| 2nlkA02 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.61 | 44.0 | 2.97e-01 | 77.3% | 51.9% |
| 2jkgA00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.60 | 45.0 | 3.44e-01 | 83.3% | 66.7% |
| 8aa9A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.59 | 42.0 | 3.57e-01 | 75.8% | 51.8% |
| 1vclA01 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.59 | 45.0 | 3.54e-01 | 84.8% | 65.8% |
| 4b6mB00 | 2.30.30.190 | Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain | 0.59 | 53.0 | 5.00e-01 | 100.0% | 91.1% |
| 1njhA00 | 2.70.180.10 | Mainly Beta › Distorted Sandwich › Protein Yojf; Chain: A; › Hypothetical protein YojF | 0.58 | 48.0 | 4.25e-01 | 100.0% | 83.3% |
| 7tzoA01 | 1.10.1070.11 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain | 0.56 | 44.0 | 3.41e-01 | 93.9% | 35.1% |
| 5h1kB02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.56 | 48.0 | 3.04e-01 | 95.5% | 40.8% |
| 2v9kA04 | 3.30.70.3190 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 47.0 | 4.09e-01 | 100.0% | 62.4% |
| 1ar0A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 45.0 | 3.79e-01 | 95.5% | 88.0% |
| 1w0pA02 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.55 | 47.0 | 2.95e-01 | 97.0% | 26.3% |
| 5c7qB00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.55 | 39.0 | 2.89e-01 | 75.8% | 47.8% |
| 3fyfA00 | 2.40.128.410 | Mainly Beta › Beta Barrel › Lipocalin › | 0.54 | 44.0 | 3.59e-01 | 100.0% | 79.9% |
| 2e5wA01 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.53 | 38.0 | 4.05e-01 | 87.9% | 89.3% |
| 4bb7B00 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.53 | 45.0 | 3.18e-01 | 100.0% | 32.5% |
| 6vp6A03 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.53 | 46.0 | 2.94e-01 | 97.0% | 21.5% |
| 2vknA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.53 | 41.0 | 4.15e-01 | 100.0% | 90.9% |
| 6vilA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.53 | 44.0 | 3.55e-01 | 100.0% | 51.7% |
| 7cceA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.52 | 44.0 | 3.50e-01 | 100.0% | 51.7% |
| 1iy9A02 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.51 | 36.0 | 3.86e-01 | 90.9% | 98.1% |
| 3luqB00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 37.0 | 3.15e-01 | 78.8% | 90.4% |
| 3o4fC01 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.50 | 35.0 | 3.74e-01 | 89.4% | 96.1% |
ECOD (63)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4605602 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.82 | 61.0 | 6.24e-01 | 95.5% | 80.0% |
| 3591224 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.78 | 55.0 | 6.22e-01 | 93.9% | 98.0% |
| 4025829 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.78 | 56.0 | 6.09e-01 | 93.9% | 90.9% |
| 3564972 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.76 | 59.0 | 5.85e-01 | 98.5% | 78.6% |
| 3741680 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.75 | 57.0 | 6.14e-01 | 97.0% | 96.4% |
| 4040055 | 4.26.1.1 ↗ | beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › Cren7 | 0.74 | 56.0 | 5.97e-01 | 93.9% | 93.1% |
| 3410370 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 66.0 | 6.46e-01 | 98.5% | 90.0% |
| 5073368 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 58.0 | 5.69e-01 | 98.5% | 80.0% |
| 4376886 | 4.1.1.241 ↗ | beta barrels › SH3 › SH3 › SH3 › NifZ | 0.71 | 64.0 | 6.00e-01 | 100.0% | 91.3% |
| 3267804 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 62.0 | 5.36e-01 | 97.0% | 89.0% |
| 3550699 | 4.8.1.10 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like | 0.70 | 64.0 | 5.61e-01 | 100.0% | 69.5% |
| 3707121 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 62.0 | 5.95e-01 | 97.0% | 98.7% |
| 3767452 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 61.0 | 5.21e-01 | 100.0% | 100.0% |
| 3059317 | 4.1.1.116 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_14 | 0.69 | 60.0 | 5.11e-01 | 100.0% | 99.1% |
| 3660358 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 52.0 | 5.43e-01 | 100.0% | 90.0% |
| 4345080 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.67 | 54.0 | 5.43e-01 | 100.0% | 89.2% |
| 3972819 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 54.0 | 4.56e-01 | 93.9% | 100.0% |
| 3396897 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.66 | 55.0 | 5.64e-01 | 93.9% | 95.2% |
| 3306779 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.65 | 52.0 | 5.32e-01 | 100.0% | 89.2% |
| 3265170 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.65 | 52.0 | 5.23e-01 | 100.0% | 87.7% |
| 3675120 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.65 | 58.0 | 5.33e-01 | 100.0% | 82.4% |
| 3608236 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.65 | 52.0 | 5.28e-01 | 100.0% | 89.2% |
| 3783834 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.65 | 53.0 | 3.56e-01 | 90.9% | 37.6% |
| 4643742 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 56.0 | 5.23e-01 | 100.0% | 83.5% |
| 4292289 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.64 | 51.0 | 5.20e-01 | 100.0% | 89.2% |
| 4012953 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.64 | 56.0 | 4.35e-01 | 100.0% | 53.3% |
| 3190995 | 4.8.1.22 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 | 0.64 | 56.0 | 4.16e-01 | 100.0% | 45.7% |
| 4027502 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 47.0 | 4.77e-01 | 100.0% | 83.1% |
| 3959531 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 50.0 | 4.90e-01 | 100.0% | 82.9% |
| 3866907 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.62 | 53.0 | 4.93e-01 | 100.0% | 83.5% |
| 4929725 | 375.1.1.289 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF5679 | 0.61 | 39.0 | 4.37e-01 | 89.4% | 95.6% |
| 4020096 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.61 | 53.0 | 4.20e-01 | 100.0% | 56.4% |
| 3615163 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.60 | 50.0 | 4.26e-01 | 90.9% | 57.9% |
| 4030767 | 3504.1.1.1 ↗ | beta barrels › MutM N-terminal domain-like › Hypothetical protein YojF › Hypothetical protein YojF › DUF1806 | 0.60 | 51.0 | 4.30e-01 | 100.0% | 85.8% |
| 4018672 | 4.1.1.225 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7025 | 0.60 | 52.0 | 4.40e-01 | 100.0% | 67.0% |
| 5032255 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 52.0 | 5.12e-01 | 98.5% | 90.0% |
| 4968231 | 2004.1.1.308 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 | 0.60 | 51.0 | 3.09e-01 | 100.0% | 15.9% |
| 3770804 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 50.0 | 4.72e-01 | 100.0% | 83.5% |
| 3521181 | 4.1.1.229 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 53.0 | 3.89e-01 | 100.0% | 44.6% |
| 2126 | 6.1.1.4 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Ricin_B_lectin | 0.59 | 45.0 | 3.54e-01 | 84.8% | 65.3% |
| 3737863 | 708.1.2.11 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › STEEP1 | 0.59 | 45.0 | 3.88e-01 | 83.3% | 68.6% |
| 3461775 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 51.0 | 4.93e-01 | 98.5% | 94.7% |
| 4982354 | 4.7.1.0 ↗ | beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 | 0.58 | 46.0 | 4.70e-01 | 100.0% | 92.3% |
| 3576235 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 52.0 | 4.97e-01 | 100.0% | 89.3% |
| 4182876 | 4964.1.1.2 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol | 0.58 | 40.0 | 2.82e-01 | 71.2% | 22.9% |
| 3670468 | 4.1.1.332 ↗ | beta barrels › SH3 › SH3 › SH3 › Peptidase_C1 | 0.58 | 50.0 | 4.06e-01 | 100.0% | 57.7% |
| 4032268 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 32.0 | 2.95e-01 | 72.7% | 38.2% |
| 3624046 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.57 | 47.0 | 3.87e-01 | 90.9% | 72.5% |
| 3848483 | 4.1.1.248 ↗ | beta barrels › SH3 › SH3 › SH3 › CABIT | 0.57 | 47.0 | 4.25e-01 | 98.5% | 78.6% |
| 4877358 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.57 | 43.0 | 3.75e-01 | 81.8% | 57.0% |
| 4982529 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.56 | 37.0 | 4.03e-01 | 83.3% | 90.0% |
| 3939142 | 206.1.1.78 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Kinase-like | 0.56 | 47.0 | 2.96e-01 | 100.0% | 25.0% |
| 3827487 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.55 | 48.0 | 2.99e-01 | 95.5% | 18.9% |
| 3579466 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.55 | 38.0 | 4.15e-01 | 93.9% | 87.3% |
| 5023617 | 4111.1.1.2 ↗ | a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC | 0.55 | 48.0 | 3.86e-01 | 100.0% | 65.2% |
| 3612182 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 46.0 | 4.27e-01 | 100.0% | 98.9% |
| 3953251 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.54 | 47.0 | 3.71e-01 | 98.5% | 93.1% |
| 3685243 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.54 | 45.0 | 2.98e-01 | 90.9% | 51.1% |
| 3967584 | 9.11.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like | 0.54 | 46.0 | 4.36e-01 | 97.0% | 81.2% |
| 4002138 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.53 | 44.0 | 2.90e-01 | 89.4% | 87.3% |
| 3595625 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.53 | 38.0 | 3.84e-01 | 90.9% | 75.4% |
| 3477683 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.53 | 46.0 | 2.95e-01 | 98.5% | 34.4% |
| 3217506 | 9.1.1.50 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF7042 | 0.51 | 42.0 | 3.62e-01 | 100.0% | 96.7% |