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term1_saliva_scaffold_3_curated_closed_complete_prodigal-single.1__X__X__00100
Bact-Virterm1_saliva_scaffold_3_curated_closed_complete_prodigal-single.1__X__X__00100
Identity
- Kingdom:
- phage
Quality
95.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-139
Domain cluster:
rep: MH825712.1__AYD87404.1__SEA_VALENTINIPUFF_111__00111__D9-126
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF22751.2 best | DUF488-N3a | 44.6 | 2.30e-11 | 75.9% | 67.8% |
| PF04343.19 | DUF488 | 36.9 | 7.10e-09 | 70.7% | 61.2% |
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2fsxA00 | 3.40.250.10 | Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain | 0.64 | 47.0 | 4.73e-01 | 100.0% | 76.5% |
| 2ep5A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.63 | 43.0 | 4.01e-01 | 97.7% | 54.7% |
| 3n0aA01 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.63 | 51.0 | 4.60e-01 | 100.0% | 63.5% |
| 3nvaA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 53.0 | 4.18e-01 | 100.0% | 59.0% |
| 2kpoA00 | 3.40.50.11230 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 35.0 | 3.78e-01 | 85.0% | 71.8% |
| 2wteA01 | 3.40.50.11700 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 46.0 | 4.59e-01 | 100.0% | 84.1% |
| 4ernA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 50.0 | 4.19e-01 | 100.0% | 80.3% |
| 7q1bA01 | 3.40.800.20 | Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain | 0.55 | 49.0 | 3.61e-01 | 100.0% | 94.9% |
| 1khtB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 44.0 | 3.92e-01 | 100.0% | 60.2% |
| 7zghA01 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.52 | 46.0 | 3.36e-01 | 100.0% | 86.1% |
| 5g0xA00 | 3.40.800.20 | Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain | 0.52 | 46.0 | 3.40e-01 | 98.5% | 89.2% |
| 8b3yA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.52 | 46.0 | 3.54e-01 | 99.2% | 99.7% |
| 1gs5A00 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.52 | 46.0 | 3.77e-01 | 100.0% | 67.1% |
| 6z6fA01 | 3.40.800.20 | Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain | 0.52 | 44.0 | 3.26e-01 | 94.7% | 91.1% |
| 1c3pA00 | 3.40.800.20 | Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain | 0.51 | 46.0 | 3.37e-01 | 99.2% | 45.4% |
| 1zu4A02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 43.0 | 3.74e-01 | 100.0% | 57.3% |
| 5f2hA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 40.0 | 3.64e-01 | 84.2% | 67.8% |
| 5g0gA00 | 3.40.800.20 | Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain | 0.51 | 45.0 | 3.36e-01 | 100.0% | 51.9% |
| 6yuqA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 41.0 | 3.37e-01 | 86.5% | 66.3% |
| 2zpaA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 41.0 | 4.15e-01 | 100.0% | 87.5% |
| 3nd5A00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.50 | 38.0 | 3.69e-01 | 100.0% | 71.1% |
| 1lucB00 | 3.20.20.30 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain | 0.50 | 44.0 | 3.36e-01 | 97.0% | 99.4% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4980726 | 2007.2.5.7 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase › DUF488-N3a | 0.84 | 69.0 | 7.44e-01 | 94.7% | 99.1% |
| 4967736 | 2007.2.3.15 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DUF488 | 0.80 | 76.0 | 7.43e-01 | 100.0% | 97.9% |
| 5018591 | 2007.2.3.15 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DUF488 | 0.76 | 71.0 | 6.52e-01 | 99.2% | 84.2% |
| 5003310 | 7550.1.1.4 ↗ | a/b three-layered sandwiches › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › DUF488 | 0.71 | 66.0 | 6.57e-01 | 100.0% | 97.0% |
| 4935532 | 7550.1.1.4 ↗ | a/b three-layered sandwiches › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › DUF488 | 0.70 | 61.0 | 6.24e-01 | 100.0% | 95.4% |
| 4953998 | 7550.1.1.1 ↗ | a/b three-layered sandwiches › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › TP_methylase | 0.62 | 46.0 | 4.98e-01 | 100.0% | 93.6% |
| 4030756 | 2004.1.1.88 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › cobW | 0.62 | 51.0 | 4.35e-01 | 100.0% | 55.2% |
| 3615530 | 2004.1.1.94 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATP_bind_1 | 0.61 | 54.0 | 4.16e-01 | 100.0% | 47.5% |
| 3700151 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.60 | 53.0 | 4.05e-01 | 96.2% | 58.7% |
| 3431291 | 2004.1.1.41 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADK | 0.59 | 43.0 | 4.69e-01 | 97.0% | 90.9% |
| 4117003 | 7550.1.1.1 ↗ | a/b three-layered sandwiches › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › TP_methylase | 0.59 | 46.0 | 4.85e-01 | 100.0% | 94.8% |
| None | — | 0.59 | 46.0 | 3.92e-01 | 100.0% | 51.2% | |
| 4113967 | 2004.1.1.60 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SKI | 0.57 | 41.0 | 3.72e-01 | 100.0% | 53.7% |
| 4928635 | 2004.1.1.141 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CTP_synth_N | 0.56 | 51.0 | 4.11e-01 | 100.0% | 55.6% |
| 4028464 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.55 | 50.0 | 3.88e-01 | 100.0% | 46.3% |
| 3708933 | 2004.1.1.65 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › 6PF2K | 0.54 | 45.0 | 3.70e-01 | 100.0% | 49.2% |
| 4971870 | 2006.1.5.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Arginase/deacetylase › Hist_deacetyl | 0.53 | 48.0 | 3.65e-01 | 100.0% | 87.2% |
| 4979840 | 2004.1.1.175 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ParA | 0.53 | 48.0 | 3.87e-01 | 100.0% | 58.8% |
| 4927826 | 2004.1.1.206 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_31 | 0.52 | 46.0 | 3.67e-01 | 100.0% | 68.3% |
| 3284711 | 7579.1.1.9 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Esterase | 0.52 | 44.0 | 3.29e-01 | 90.2% | 38.6% |
| 4133406 | 2004.1.1.59 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE | 0.52 | 44.0 | 3.87e-01 | 100.0% | 61.0% |
| 3245121 | 2006.1.5.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Arginase/deacetylase › Hist_deacetyl | 0.51 | 43.0 | 3.24e-01 | 95.5% | 86.2% |
| 5026856 | 2004.1.1.206 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_31 | 0.51 | 45.0 | 3.73e-01 | 100.0% | 60.0% |
| 3364595 | 7585.1.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Sec1 | 0.50 | 35.0 | 3.08e-01 | 72.2% | 63.8% |
| 3798186 | 2007.2.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II | 0.50 | 44.0 | 3.24e-01 | 100.0% | 61.0% |