←Back to structures
term1_saliva_scaffold_3_curated_closed_complete_prodigal-single.1__X__X__00117
Bact-Virterm1_saliva_scaffold_3_curated_closed_complete_prodigal-single.1__X__X__00117
Identity
- Kingdom:
- phage
Quality
92.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 3-40
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2hydA01 | 1.20.1560.10 | Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain | 0.72 | 59.0 | 3.54e-01 | 100.0% | 39.9% |
| 2gsvA00 | 6.10.140.40 | Special › Helix non-globular › Helix Hairpins › | 0.71 | 57.0 | 4.88e-01 | 97.4% | 85.1% |
| 1hypA00 | 1.10.110.10 | Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins | 0.67 | 54.0 | 4.45e-01 | 97.4% | 60.0% |
| 1icrA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.65 | 47.0 | 3.04e-01 | 84.2% | 38.4% |
| 5djsA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.65 | 48.0 | 3.33e-01 | 84.2% | 27.3% |
| 7ce1A01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.63 | 44.0 | 4.06e-01 | 100.0% | 53.8% |
| 4efcA03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.62 | 49.0 | 4.45e-01 | 100.0% | 80.3% |
| 3t38A01 | 1.10.8.1060 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Corynebacterium glutamicum thioredoxin-dependent arsenate reductase, N-terminal domain | 0.61 | 43.0 | 3.56e-01 | 73.7% | 49.3% |
| 4by6B00 | 2.30.30.1020 | Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain | 0.61 | 49.0 | 3.36e-01 | 100.0% | 23.5% |
| 7odyC01 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.60 | 45.0 | 3.74e-01 | 100.0% | 57.6% |
| 3n5lA03 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 41.0 | 3.75e-01 | 73.7% | 47.4% |
| 2q0oC00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.60 | 42.0 | 3.32e-01 | 78.9% | 33.7% |
| 6b8hO01 | 1.10.520.20 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase | 0.60 | 45.0 | 3.59e-01 | 97.4% | 100.0% |
| 3ismC01 | 1.25.40.240 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ku, C-terminal domain | 0.60 | 47.0 | 3.20e-01 | 94.7% | 40.9% |
| 5hayA02 | 1.25.40.440 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Nucleoporin, helical domain, central subdomain | 0.59 | 48.0 | 3.93e-01 | 94.7% | 46.8% |
| 2o4cA03 | 3.30.1370.170 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Erythronate-4-phosphate dehydrogenase, dimerisation domain | 0.59 | 48.0 | 3.80e-01 | 100.0% | 79.5% |
| 4xxiA00 | 1.10.490.20 | Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins | 0.58 | 42.0 | 3.14e-01 | 100.0% | 35.4% |
| 1cf7B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 42.0 | 3.62e-01 | 94.7% | 63.4% |
| 7krzA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.58 | 39.0 | 3.12e-01 | 71.1% | 35.7% |
| 2qezA02 | 1.10.220.70 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › lyase | 0.57 | 45.0 | 3.64e-01 | 97.4% | 48.3% |
| 3tjtA01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.56 | 41.0 | 3.66e-01 | 94.7% | 53.5% |
| 1uzcA00 | 1.10.10.440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain | 0.55 | 42.0 | 3.72e-01 | 100.0% | 65.2% |
| 2pkeA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.54 | 41.0 | 3.56e-01 | 100.0% | 76.9% |
| 5nohA00 | 1.20.120.1350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pneumovirus matrix protein 2 (M2), zinc-binding domain | 0.54 | 46.0 | 3.47e-01 | 97.4% | 40.8% |
| 3axjB02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.54 | 43.0 | 3.51e-01 | 100.0% | 68.2% |
| 2l89A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 38.0 | 3.06e-01 | 100.0% | 73.1% |
| 3ss3C02 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.51 | 39.0 | 2.43e-01 | 100.0% | 40.3% |
| 3tufA00 | 1.10.287.4300 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Stage III sporulation protein AH-like | 0.51 | 38.0 | 2.95e-01 | 100.0% | 31.3% |
| 1h3zA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 36.0 | 2.92e-01 | 97.4% | 80.6% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4032308 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.91 | 63.0 | 3.98e-01 | 73.7% | 16.5% |
| 3393934 | 632.2.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains | 0.90 | 61.0 | 6.66e-01 | 71.1% | 90.0% |
| 4324592 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.89 | 62.0 | 4.43e-01 | 73.7% | 28.0% |
| 3905118 | 4207.1.1.11 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › RNA polymerase II holoenzyme component SRB7 (MED21) › Mis14 | 0.89 | 60.0 | 4.34e-01 | 71.1% | 28.0% |
| 5006804 | 2007.1.1.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › GATase | 0.83 | 69.0 | 4.26e-01 | 94.7% | 42.3% |
| 3316616 | 632.2.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains | 0.80 | 54.0 | 4.84e-01 | 71.1% | 49.1% |
| 4330011 | 570.1.1.1 ↗ | alpha arrays › Pre-protein crosslinking domain of SecA › Pre-protein crosslinking domain of SecA › Pre-protein crosslinking domain of SecA › SecA_PP_bind | 0.79 | 56.0 | 3.61e-01 | 76.3% | 16.6% |
| 5075120 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.77 | 53.0 | 3.40e-01 | 71.1% | 15.6% |
| 3930816 | 101.1.2.236 ↗ | alpha arrays › HTH › HTH › winged helix domain › POLR3C_WHD | 0.77 | 53.0 | 3.16e-01 | 73.7% | 10.2% |
| 4287137 | 3455.1.1.0 ↗ | alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors | 0.76 | 64.0 | 4.87e-01 | 97.4% | 48.9% |
| 4034213 | 632.2.1.5 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › DUF1542 | 0.76 | 51.0 | 4.06e-01 | 71.1% | 33.8% |
| 3349724 | 397.7.1.0 ↗ | few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 | 0.69 | 47.0 | 4.80e-01 | 71.1% | 77.1% |
| 3616157 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.68 | 52.0 | 4.17e-01 | 97.4% | 76.8% |
| 3592477 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.68 | 54.0 | 4.86e-01 | 100.0% | 83.3% |
| 4033037 | 632.19.1.3 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › DUF1542 | 0.67 | 46.0 | 3.94e-01 | 73.7% | 40.0% |
| 3320729 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.67 | 45.0 | 3.82e-01 | 71.1% | 40.0% |
| 4683232 | 3455.1.1.0 ↗ | alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors | 0.65 | 56.0 | 4.74e-01 | 100.0% | 66.2% |
| 4351804 | 605.1.1.108 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › GrpE | 0.64 | 45.0 | 3.39e-01 | 73.7% | 28.0% |
| 3738337 | 604.3.1.1 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG | 0.64 | 49.0 | 3.80e-01 | 94.7% | 64.8% |
| 4375086 | 605.1.1.108 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › GrpE | 0.63 | 43.0 | 3.95e-01 | 73.7% | 56.4% |
| 3283001 | 605.1.1.4 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 | 0.62 | 43.0 | 3.33e-01 | 73.7% | 29.5% |
| 1391387 | 4953.1.1.1 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C | 0.62 | 50.0 | 4.15e-01 | 100.0% | 56.4% |
| 5042887 | 2498.1.1.10 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 | 0.61 | 49.0 | 3.01e-01 | 97.4% | 74.3% |
| 3398473 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.60 | 41.0 | 3.04e-01 | 71.1% | 45.5% |
| 3781414 | 3396.1.1.1 ↗ | extended segments › HIG1 domain family member 1A › HIG1 domain family member 1A › HIG1 domain family member 1A › HIG_1_N | 0.57 | 39.0 | 3.08e-01 | 81.6% | 55.5% |
| 4139865 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.56 | 42.0 | 2.67e-01 | 100.0% | 14.9% |
D2
medium
residues 104-161
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4b6dB00 | 3.30.60.20 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.74 | 47.0 | 4.81e-01 | 98.3% | 66.7% |
| 1y8fA00 | 3.30.60.20 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.70 | 46.0 | 4.86e-01 | 98.3% | 78.4% |
| 1xa6A02 | 3.30.60.20 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.69 | 46.0 | 4.42e-01 | 100.0% | 59.4% |
| 1yuiA00 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.58 | 29.0 | 3.06e-01 | 87.9% | 48.1% |
| 2drpA02 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.54 | 26.0 | 3.29e-01 | 86.2% | 75.9% |
| 2xzm500 | 3.30.1740.20 | Alpha Beta › 2-Layer Sandwich › first zn-finger domain of poly(adp-ribose) polymerase-1 › Ribosomal protein S26 | 0.53 | 31.0 | 2.61e-01 | 94.8% | 32.7% |
| 4ijdA02 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.52 | 27.0 | 3.18e-01 | 86.2% | 80.6% |
| 3f9uA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.52 | 35.0 | 2.70e-01 | 72.4% | 73.8% |
| 1tvzA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.51 | 39.0 | 3.06e-01 | 87.9% | 61.9% |
| 2mknA00 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.51 | 27.0 | 3.04e-01 | 87.9% | 59.1% |
| 4oifA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.51 | 32.0 | 3.16e-01 | 94.8% | 56.5% |
| 1iv8A05 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.51 | 32.0 | 3.09e-01 | 94.8% | 53.0% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3539719 | 376.1.2.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 | 0.75 | 50.0 | 4.71e-01 | 100.0% | 57.1% |
| 4011230 | 375.4.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Nucleolar RNA-binding protein Nop10-like › Nucleolar RNA-binding protein Nop10-like | 0.75 | 45.0 | 4.84e-01 | 100.0% | 70.0% |
| 3597664 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.66 | 42.0 | 4.66e-01 | 100.0% | 84.4% |
| 4011311 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.58 | 29.0 | 3.55e-01 | 86.2% | 83.3% |
| 3486767 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.56 | 29.0 | 3.34e-01 | 87.9% | 67.5% |
| 3887483 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.53 | 26.0 | 3.29e-01 | 84.5% | 80.0% |
| 3915822 | 386.1.1.18 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_jaz | 0.53 | 26.0 | 3.30e-01 | 86.2% | 83.3% |
| 4464615 | 865.1.1.0 ↗ | beta complex topology › PheT/TilS domain › PheT/TilS domain › PheT/TilS domain | 0.52 | 40.0 | 2.83e-01 | 87.9% | 88.4% |
| 3222487 | 386.1.1.20 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met | 0.51 | 29.0 | 3.19e-01 | 89.7% | 68.9% |