←Back to structures

term1_saliva_scaffold_3_curated_closed_complete_prodigal-single.1__X__X__00144

Bact-Vir

term1_saliva_scaffold_3_curated_closed_complete_prodigal-single.1__X__X__00144

Identity

Kingdom:
phage

Quality

87.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-102
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.67 31.0 4.15e-01 100.0% 82.7%
3b79A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.66 32.0 3.00e-01 100.0% 36.0%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.65 31.0 3.10e-01 100.0% 41.2%
3kbgA02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.64 27.0 3.55e-01 91.8% 69.8%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.64 31.0 4.12e-01 100.0% 91.7%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 32.0 4.31e-01 100.0% 100.0%
2evrA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 37.0 4.22e-01 100.0% 82.4%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.60 30.0 3.83e-01 100.0% 85.2%
2e70A00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 30.0 3.46e-01 100.0% 64.8%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 32.0 4.05e-01 100.0% 89.8%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 33.0 4.13e-01 100.0% 93.1%
3i35A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 32.0 4.05e-01 100.0% 93.0%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 32.0 3.99e-01 100.0% 91.4%
1jbjA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 29.0 3.00e-01 86.7% 50.6%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 32.0 3.91e-01 96.9% 91.7%
1r5mA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 40.0 2.79e-01 79.6% 51.0%
3ow8C00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 45.0 3.26e-01 95.9% 91.7%
3jbtA06 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 44.0 3.18e-01 95.9% 91.3%
5ic7A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 42.0 2.98e-01 90.8% 95.3%
1s1dA00 2.120.10.100 Mainly Beta › 6 Propeller › Neuraminidase › Apyrase 0.51 44.0 3.18e-01 100.0% 97.5%
5c2vB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 44.0 3.09e-01 100.0% 93.5%
4hdjA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 43.0 2.99e-01 95.9% 88.2%
1afcA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.50 37.0 3.50e-01 80.6% 92.9%
4g9mB00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.50 38.0 3.36e-01 80.6% 91.6%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5002449 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 31.0 3.91e-01 100.0% 70.9%
4679625 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 32.0 3.99e-01 100.0% 76.7%
3910607 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.64 37.0 4.48e-01 100.0% 87.5%
3789233 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 33.0 4.00e-01 100.0% 81.5%
3486189 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 33.0 4.12e-01 100.0% 91.7%
3597352 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 46.0 3.20e-01 92.9% 89.0%
4958339 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.54 29.0 2.87e-01 100.0% 46.4%
4629022 4.1.1.238 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.54 31.0 3.54e-01 100.0% 78.6%
3609404 5.1.4.48 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS1 0.53 40.0 2.77e-01 82.7% 53.7%
3666797 5.1.4.45 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_3 0.53 39.0 2.60e-01 78.6% 65.1%
None — 0.53 45.0 3.25e-01 95.9% 89.9%
3656591 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 43.0 2.88e-01 95.9% 87.6%
5033415 5.1.5.11 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PQQ_2 0.51 43.0 2.97e-01 95.9% 97.4%
3358533 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.51 42.0 2.91e-01 95.9% 74.8%
3916215 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 43.0 2.97e-01 95.9% 87.9%
3566180 5.1.4.272 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_EML_2 0.50 40.0 2.89e-01 91.8% 84.7%