←Back to structures
term1_saliva_scaffold_3_curated_closed_complete_prodigal-single.1__X__X__00163
Bact-Virterm1_saliva_scaffold_3_curated_closed_complete_prodigal-single.1__X__X__00163
Identity
- Kingdom:
- phage
Quality
83.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-86
Domain cluster:
representative
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vwxS02 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.63 | 45.0 | 4.68e-01 | 79.8% | 82.9% |
| 3ffyA00 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.62 | 43.0 | 4.01e-01 | 96.4% | 56.2% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.61 | 37.0 | 3.67e-01 | 71.4% | 55.4% |
| 1j5yA02 | 3.30.1340.20 | Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › 3H domain | 0.60 | 49.0 | 4.55e-01 | 97.6% | 71.0% |
| 1cbfA02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.60 | 44.0 | 3.94e-01 | 98.8% | 54.5% |
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.60 | 44.0 | 4.74e-01 | 98.8% | 100.0% |
| 2hj1A00 | 3.10.20.280 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like | 0.59 | 38.0 | 4.01e-01 | 73.8% | 72.7% |
| 3k59A02 | 3.30.70.2250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › B family DNA polymerase, N domain, alpha/beta motif | 0.58 | 29.0 | 3.24e-01 | 95.2% | 58.2% |
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.58 | 41.0 | 4.29e-01 | 79.8% | 81.6% |
| 3db0B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.57 | 43.0 | 3.83e-01 | 89.3% | 54.8% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.57 | 36.0 | 3.51e-01 | 73.8% | 56.4% |
| 2ia0B02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.56 | 41.0 | 3.96e-01 | 79.8% | 84.8% |
| 2avxA00 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.56 | 38.0 | 3.14e-01 | 72.6% | 42.7% |
| 3hvnA01 | 3.90.840.10 | Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain | 0.56 | 47.0 | 3.82e-01 | 97.6% | 55.8% |
| 1r89A03 | 3.30.70.590 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Poly(A) polymerase predicted RNA binding domain | 0.55 | 42.0 | 3.74e-01 | 85.7% | 93.3% |
| 1vwxS01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.55 | 41.0 | 4.36e-01 | 85.7% | 95.8% |
| 4ybnB00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.55 | 44.0 | 3.37e-01 | 89.3% | 81.5% |
| 4lsdF00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 44.0 | 4.20e-01 | 94.0% | 76.5% |
| 1m55A00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.54 | 40.0 | 3.15e-01 | 79.8% | 97.4% |
| 2furB00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.54 | 43.0 | 3.40e-01 | 89.3% | 85.8% |
| 2q9kA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.54 | 43.0 | 3.68e-01 | 89.3% | 80.3% |
| 2r0xA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.54 | 39.0 | 3.28e-01 | 78.6% | 83.3% |
| 2ou5A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.54 | 42.0 | 3.44e-01 | 88.1% | 43.4% |
| 4a18X01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.53 | 42.0 | 4.32e-01 | 85.7% | 98.7% |
| 4ca1B02 | 2.60.210.10 | Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 0.53 | 44.0 | 3.94e-01 | 98.8% | 86.4% |
| 2htiA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 41.0 | 3.69e-01 | 86.9% | 94.4% |
| 1dleB02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.52 | 39.0 | 3.39e-01 | 82.1% | 65.5% |
| 2efpA02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.52 | 39.0 | 3.78e-01 | 82.1% | 84.7% |
| 1xreA02 | 3.55.40.20 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain | 0.52 | 37.0 | 3.49e-01 | 78.6% | 88.4% |
| 1dgsA02 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.51 | 40.0 | 3.94e-01 | 96.4% | 80.0% |
| 3ms6A00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.51 | 32.0 | 3.22e-01 | 71.4% | 60.0% |
| 3ibwA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.50 | 35.0 | 3.59e-01 | 72.6% | 100.0% |
| 3bm7A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 40.0 | 3.77e-01 | 89.3% | 97.2% |
| 4msxA02 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.50 | 42.0 | 2.99e-01 | 97.6% | 32.8% |
| 3iwcB00 | 3.30.360.110 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › S-adenosylmethionine decarboxylase domain | 0.50 | 27.0 | 3.01e-01 | 96.4% | 65.6% |
| 5ixuA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 36.0 | 3.44e-01 | 77.4% | 98.0% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4064699 | 327.6.1.8 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like › PF29609 | 0.65 | 45.0 | 3.94e-01 | 72.6% | 76.2% |
| 4939739 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.63 | 43.0 | 4.94e-01 | 81.0% | 100.0% |
| 4969863 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.62 | 43.0 | 4.58e-01 | 79.8% | 82.7% |
| 4013514 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.62 | 45.0 | 4.18e-01 | 81.0% | 61.0% |
| 1937092 | 1137.1.1.1 ↗ | a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain › TP_methylase | 0.62 | 43.0 | 4.01e-01 | 96.4% | 56.2% |
| 5065436 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.61 | 43.0 | 4.73e-01 | 81.0% | 95.3% |
| 4265395 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.61 | 54.0 | 4.87e-01 | 100.0% | 73.0% |
| 5030993 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.61 | 44.0 | 4.54e-01 | 81.0% | 80.0% |
| 4967222 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.61 | 42.0 | 4.71e-01 | 81.0% | 100.0% |
| 5067865 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.60 | 42.0 | 4.58e-01 | 81.0% | 88.6% |
| 2006900 | 302.4.1.0 ↗ | a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit | 0.60 | 53.0 | 4.99e-01 | 100.0% | 88.5% |
| 4345353 | 322.1.1.2 ↗ | a+b two layers › HPr-like › HPr-like › HPr-like › 3H | 0.60 | 50.0 | 4.48e-01 | 96.4% | 65.0% |
| 4951473 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.60 | 41.0 | 4.60e-01 | 77.4% | 95.2% |
| 4988 | 322.1.1.2 ↗ | a+b two layers › HPr-like › HPr-like › HPr-like › 3H | 0.60 | 49.0 | 4.55e-01 | 97.6% | 71.0% |
| 5022263 | 322.1.1.2 ↗ | a+b two layers › HPr-like › HPr-like › HPr-like › 3H | 0.60 | 49.0 | 4.53e-01 | 97.6% | 70.0% |
| 4996552 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.60 | 43.0 | 4.35e-01 | 81.0% | 75.3% |
| 4990637 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.59 | 43.0 | 4.40e-01 | 81.0% | 78.3% |
| 3551719 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.58 | 43.0 | 4.49e-01 | 81.0% | 86.7% |
| 4084879 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.57 | 43.0 | 4.35e-01 | 81.0% | 80.0% |
| 4160542 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.57 | 38.0 | 4.29e-01 | 76.2% | 100.0% |
| 2106285 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.56 | 39.0 | 3.64e-01 | 81.0% | 56.5% |
| 4943401 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.56 | 40.0 | 4.02e-01 | 81.0% | 75.3% |
| 5074648 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.56 | 39.0 | 4.04e-01 | 81.0% | 81.3% |
| 3850966 | 3346.1.1.1 ↗ | a+b two layers › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › UfSP2_N | 0.56 | 39.0 | 2.84e-01 | 73.8% | 56.8% |
| 3196763 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.55 | 39.0 | 2.78e-01 | 75.0% | 36.7% |
| 5011497 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.55 | 48.0 | 3.71e-01 | 100.0% | 64.5% |
| 2831852 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.54 | 37.0 | 3.58e-01 | 81.0% | 60.4% |
| 1442666 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.54 | 42.0 | 4.32e-01 | 85.7% | 97.5% |
| 2527501 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.54 | 38.0 | 3.62e-01 | 84.5% | 60.6% |
| 4954188 | 2492.1.1.7 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ | 0.54 | 37.0 | 3.11e-01 | 71.4% | 65.8% |
| 3957699 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.54 | 31.0 | 3.21e-01 | 100.0% | 57.5% |
| 2512518 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.54 | 37.0 | 3.56e-01 | 81.0% | 60.4% |
| 3935630 | 3346.1.1.0 ↗ | a+b two layers › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 | 0.54 | 37.0 | 2.89e-01 | 72.6% | 51.7% |
| 5039449 | 302.4.1.0 ↗ | a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit | 0.54 | 46.0 | 4.37e-01 | 100.0% | 84.8% |
| 5053356 | 304.4.1.4 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM | 0.53 | 40.0 | 3.86e-01 | 81.0% | 100.0% |
| 4982218 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.51 | 38.0 | 3.62e-01 | 81.0% | 90.5% |
| 3357805 | 3887.2.1.1 ↗ | a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung | 0.51 | 35.0 | 3.70e-01 | 72.6% | 85.3% |
| 4963170 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.51 | 36.0 | 3.60e-01 | 75.0% | 86.7% |
| 4278178 | 10.32.1.192 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › C-JID | 0.51 | 43.0 | 3.55e-01 | 100.0% | 67.6% |
| 5047755 | 2492.1.1.7 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ | 0.50 | 36.0 | 3.12e-01 | 76.2% | 73.6% |
D2
medium
residues 88-148
Domain cluster:
representative
CATH (41)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.67 | 53.0 | 4.98e-01 | 96.7% | 71.1% |
| 1vwxS02 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.64 | 51.0 | 4.88e-01 | 98.4% | 75.0% |
| 2qsdA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.64 | 53.0 | 5.19e-01 | 98.4% | 88.1% |
| 1c3gA01 | 2.60.260.20 | Mainly Beta › Sandwich › HSP40/DNAj peptide-binding domain › Urease metallochaperone UreE, N-terminal domain | 0.63 | 50.0 | 4.72e-01 | 90.2% | 75.6% |
| 2q7nA05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 53.0 | 4.53e-01 | 100.0% | 59.2% |
| 1n26A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 46.0 | 4.30e-01 | 100.0% | 64.1% |
| 2bs2B01 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.61 | 50.0 | 4.29e-01 | 96.7% | 84.0% |
| 7r3eB02 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.61 | 46.0 | 3.42e-01 | 83.6% | 42.9% |
| 1et9A01 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.61 | 51.0 | 4.27e-01 | 96.7% | 93.6% |
| 1hq6B00 | 3.50.20.10 | Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Pyruvoyl-Dependent Histidine Decarboxylase, subunit B | 0.60 | 49.0 | 3.50e-01 | 100.0% | 43.9% |
| 3kwlA01 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.60 | 49.0 | 4.33e-01 | 96.7% | 80.4% |
| 2c4xA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.59 | 52.0 | 3.90e-01 | 100.0% | 59.6% |
| 2nytD00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.59 | 50.0 | 3.69e-01 | 100.0% | 73.7% |
| 1kf6B01 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.59 | 48.0 | 4.16e-01 | 96.7% | 81.7% |
| 3hvnA01 | 3.90.840.10 | Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain | 0.59 | 50.0 | 3.70e-01 | 100.0% | 65.1% |
| 2xzmZ00 | 3.30.1230.20 | Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 | 0.58 | 43.0 | 3.85e-01 | 88.5% | 53.6% |
| 6cc0A01 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.57 | 43.0 | 3.23e-01 | 83.6% | 42.7% |
| 2imlA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.57 | 48.0 | 4.03e-01 | 100.0% | 53.1% |
| 4ktbA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.57 | 47.0 | 3.59e-01 | 96.7% | 48.1% |
| 7emfR01 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.57 | 47.0 | 3.46e-01 | 95.1% | 56.0% |
| 4u7cB04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.57 | 47.0 | 4.04e-01 | 100.0% | 57.8% |
| 4emeC02 | 2.30.250.10 | Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 | 0.56 | 46.0 | 3.77e-01 | 100.0% | 95.6% |
| 3waiA02 | 2.60.40.3390 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 46.0 | 4.11e-01 | 100.0% | 62.4% |
| 4f4oC02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.55 | 48.0 | 3.63e-01 | 100.0% | 58.4% |
| 2mraA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.55 | 45.0 | 3.76e-01 | 96.7% | 83.8% |
| 4qmaA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.55 | 38.0 | 3.06e-01 | 100.0% | 32.9% |
| 2zewB00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.54 | 45.0 | 3.56e-01 | 100.0% | 61.9% |
| 1s3rA04 | 2.60.40.1430 | Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 | 0.54 | 46.0 | 3.88e-01 | 100.0% | 71.2% |
| 1lb6A00 | 2.60.210.10 | Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 0.54 | 45.0 | 3.49e-01 | 100.0% | 72.9% |
| 1v5oA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.54 | 45.0 | 3.87e-01 | 96.7% | 72.5% |
| 3bpnC03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 45.0 | 3.95e-01 | 100.0% | 65.3% |
| 3jamD02 | 3.30.1140.32 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain | 0.54 | 41.0 | 3.21e-01 | 83.6% | 60.2% |
| 4h3wA02 | 2.60.120.1260 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 44.0 | 3.45e-01 | 100.0% | 42.1% |
| 2ptfA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 43.0 | 3.46e-01 | 100.0% | 90.5% |
| 3gtyX02 | 3.10.50.30 | Alpha Beta › Roll › Chitinase A; domain 3 › Transcription elongation factor, GreA/GreB, C-terminal domain | 0.52 | 45.0 | 4.11e-01 | 100.0% | 83.3% |
| 3w1eA03 | 2.40.10.410 | Mainly Beta › Beta Barrel › Thrombin, subunit H › FlgT, C-terminal domain | 0.52 | 43.0 | 3.90e-01 | 100.0% | 71.9% |
| 5jtwA01 | 2.60.40.1930 | Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain | 0.52 | 41.0 | 3.30e-01 | 93.4% | 79.1% |
| 2avxA00 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.52 | 39.0 | 2.93e-01 | 85.2% | 40.9% |
| 3t91B00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.51 | 41.0 | 2.94e-01 | 96.7% | 41.6% |
| 3ihlB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 39.0 | 2.79e-01 | 91.8% | 82.1% |
| 2xskA00 | 2.60.40.2420 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 42.0 | 3.77e-01 | 100.0% | 69.5% |
ECOD (53)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4990637 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.70 | 57.0 | 5.17e-01 | 96.7% | 66.3% |
| 5067865 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.69 | 55.0 | 5.31e-01 | 98.4% | 77.1% |
| 4942818 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.68 | 57.0 | 4.46e-01 | 96.7% | 45.0% |
| 4128974 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.68 | 57.0 | 5.27e-01 | 96.7% | 72.5% |
| 4967222 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.68 | 53.0 | 5.40e-01 | 96.7% | 90.0% |
| 3705042 | 230.5.1.2 ↗ | a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › MVP_shoulder | 0.67 | 50.0 | 4.54e-01 | 82.0% | 74.1% |
| 4939739 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.66 | 52.0 | 5.34e-01 | 98.4% | 94.9% |
| 3821082 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.66 | 52.0 | 4.58e-01 | 98.4% | 57.9% |
| 3436318 | 230.5.1.0 ↗ | a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain | 0.65 | 49.0 | 4.37e-01 | 83.6% | 64.5% |
| 3517068 | 3115.1.1.6 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494 | 0.65 | 52.0 | 5.16e-01 | 96.7% | 87.7% |
| 4648475 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.64 | 51.0 | 5.13e-01 | 95.1% | 93.3% |
| 3818469 | 2484.1.1.67 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 | 0.64 | 53.0 | 4.39e-01 | 100.0% | 91.2% |
| 3267048 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.64 | 53.0 | 4.44e-01 | 98.4% | 67.8% |
| 5005269 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.63 | 55.0 | 4.26e-01 | 100.0% | 65.0% |
| 4810251 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.63 | 52.0 | 3.53e-01 | 96.7% | 23.0% |
| 2106285 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.63 | 50.0 | 4.32e-01 | 98.4% | 52.8% |
| 3874464 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.63 | 51.0 | 3.27e-01 | 96.7% | 17.2% |
| 3413652 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.62 | 46.0 | 4.68e-01 | 98.4% | 81.7% |
| 3625948 | 2008.1.1.24 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDCD9 | 0.61 | 47.0 | 2.91e-01 | 85.2% | 43.0% |
| 3892842 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.61 | 49.0 | 4.88e-01 | 96.7% | 87.7% |
| 3966635 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.61 | 47.0 | 3.40e-01 | 83.6% | 41.2% |
| 4956172 | 221.1.1.47 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Fer2_3 | 0.61 | 51.0 | 4.24e-01 | 98.4% | 74.8% |
| 3724981 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.60 | 36.0 | 2.49e-01 | 96.7% | 16.4% |
| 1145963 | 4012.3.1.1 ↗ | a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 › Cas9_PI | 0.60 | 51.0 | 4.43e-01 | 100.0% | 100.0% |
| 5072902 | 221.1.1.47 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Fer2_3 | 0.60 | 49.0 | 4.02e-01 | 96.7% | 84.0% |
| 223860 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.59 | 49.0 | 4.35e-01 | 96.7% | 82.1% |
| 5010503 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 51.0 | 4.50e-01 | 100.0% | 71.6% |
| 3732197 | 11.1.1.643 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig-like_POM152 | 0.59 | 51.0 | 4.28e-01 | 100.0% | 82.7% |
| 4240250 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.59 | 48.0 | 3.93e-01 | 96.7% | 61.6% |
| 5043357 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 51.0 | 4.30e-01 | 100.0% | 59.0% |
| 3510040 | 3115.3.1.2 ↗ | a+b two layers › GP2-like › P56 › P56 › DUF2922 | 0.58 | 49.0 | 4.54e-01 | 96.7% | 82.5% |
| 5018601 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 46.0 | 4.01e-01 | 100.0% | 55.0% |
| 5042583 | 10.3.1.0 ↗ | beta sandwiches › jelly-roll › TNF-like › TNF-like | 0.58 | 50.0 | 4.40e-01 | 100.0% | 76.8% |
| 4324528 | 284.1.3.1 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 | 0.57 | 48.0 | 4.54e-01 | 98.4% | 81.3% |
| 1907312 | 223.1.1.7 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind | 0.57 | 42.0 | 3.15e-01 | 83.6% | 40.7% |
| 4115421 | 11.15.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Perfringolysin O beta sandwich domain › Perfringolysin O beta sandwich domain › Thiol_cytolys_C | 0.56 | 49.0 | 4.05e-01 | 100.0% | 68.7% |
| 4985246 | 11.14.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domains in STT3 › Ig-like domains in STT3 › AglB_L1 | 0.56 | 48.0 | 4.26e-01 | 100.0% | 68.8% |
| 4029586 | 10.32.1.203 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin | 0.55 | 47.0 | 3.64e-01 | 100.0% | 76.0% |
| 3283168 | 210.1.3.3 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 | 0.55 | 48.0 | 3.15e-01 | 100.0% | 28.5% |
| 3469919 | 230.2.1.1 ↗ | a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C | 0.55 | 39.0 | 3.68e-01 | 83.6% | 61.3% |
| 3785342 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.55 | 45.0 | 3.04e-01 | 100.0% | 33.8% |
| 4944742 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 45.0 | 3.68e-01 | 100.0% | 57.7% |
| 337395 | 10.32.1.8 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_4_9 | 0.54 | 45.0 | 3.56e-01 | 100.0% | 61.9% |
| 3567301 | 11.10.1.4 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › TRAF-mep_MATH | 0.53 | 44.0 | 3.39e-01 | 100.0% | 68.5% |
| 3339376 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.52 | 44.0 | 3.63e-01 | 100.0% | 51.3% |
| 4463842 | 230.2.1.1 ↗ | a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C | 0.52 | 40.0 | 3.26e-01 | 85.2% | 64.8% |
| 3593808 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.52 | 45.0 | 3.87e-01 | 100.0% | 67.0% |
| 3921165 | 4004.1.1.0 ↗ | beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like | 0.52 | 43.0 | 3.36e-01 | 100.0% | 62.7% |
| 3895154 | 221.1.1.43 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF3337 | 0.51 | 41.0 | 3.50e-01 | 98.4% | 93.9% |
| 3296651 | 3662.1.1.1 ↗ | a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › PAC3 | 0.50 | 41.0 | 3.47e-01 | 96.7% | 98.3% |
| 3622256 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.50 | 40.0 | 3.13e-01 | 98.4% | 36.8% |
| 3477515 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.50 | 43.0 | 3.57e-01 | 100.0% | 64.3% |
| 4191828 | 5.1.4.100 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Med16_N | 0.50 | 37.0 | 2.25e-01 | 86.9% | 75.5% |