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term1_saliva_scaffold_3_curated_closed_complete_prodigal-single.1__X__X__00175
Bact-Virterm1_saliva_scaffold_3_curated_closed_complete_prodigal-single.1__X__X__00175
Identity
- Kingdom:
- phage
Quality
79.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 35-178
Domain cluster:
rep: Salt_Pond_R1_A_D2_MG_scaffold_27_prodigal-single.1__X__X__00265__D1307-1412
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6j9eD01 | 1.10.274.100 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › RNA polymerase Rpb1, domain 3 | 0.80 | 68.0 | 7.21e-01 | 90.3% | 100.0% |
| 1ddqD02 | 1.10.274.100 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › RNA polymerase Rpb1, domain 3 | 0.79 | 75.0 | 6.85e-01 | 100.0% | 97.2% |
| 1twfA05 | 1.10.274.100 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › RNA polymerase Rpb1, domain 3 | 0.60 | 57.0 | 5.56e-01 | 100.0% | 97.4% |
| 5bu9A00 | 3.20.20.300 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase, family 3, N-terminal domain | 0.53 | 45.0 | 3.48e-01 | 93.8% | 98.8% |
| 5k6lA02 | 3.20.20.300 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase, family 3, N-terminal domain | 0.52 | 44.0 | 3.41e-01 | 94.4% | 84.0% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4309255 | 4959.1.1.1 ↗ | a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 | 0.84 | 76.0 | 6.77e-01 | 93.1% | 100.0% |
| 4289952 | 4959.1.1.1 ↗ | a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 | 0.84 | 75.0 | 7.08e-01 | 93.1% | 100.0% |
| 4598945 | 4959.1.1.0 ↗ | a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit | 0.80 | 72.0 | 7.27e-01 | 94.4% | 100.0% |
| 4419843 | 4959.1.1.1 ↗ | a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 | 0.80 | 72.0 | 6.43e-01 | 93.8% | 98.9% |
| 4035686 | 4959.1.1.1 ↗ | a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 | 0.80 | 72.0 | 7.33e-01 | 93.8% | 99.3% |
| 4440636 | 4959.1.1.1 ↗ | a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 | 0.79 | 72.0 | 7.33e-01 | 94.4% | 97.9% |
| 4384629 | 4959.1.1.1 ↗ | a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 | 0.79 | 72.0 | 7.39e-01 | 95.8% | 98.6% |
| 4445936 | 4959.1.1.1 ↗ | a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 | 0.78 | 70.0 | 6.91e-01 | 93.8% | 98.7% |
| 4889093 | 4959.1.1.1 ↗ | a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 | 0.78 | 62.0 | 6.43e-01 | 85.4% | 88.1% |
| 4145376 | 4959.1.1.0 ↗ | a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit | 0.76 | 64.0 | 6.74e-01 | 93.8% | 99.2% |
| 3256882 | 103.8.1.1 ↗ | alpha arrays › RuvA-C › Hypothetical protein AF0491, middle domain › Hypothetical protein AF0491, middle domain › SBDS_domain_II | 0.54 | 23.0 | 3.07e-01 | 90.3% | 74.3% |
| 4389679 | 4959.1.1.1 ↗ | a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 | 0.54 | 43.0 | 4.64e-01 | 84.0% | 97.6% |
| 4136028 | 2002.1.1.39 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_3 | 0.53 | 45.0 | 3.50e-01 | 94.4% | 97.4% |
| 3627298 | 108.1.1.30 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_8 | 0.53 | 31.0 | 2.91e-01 | 92.4% | 45.7% |
| 3499953 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.52 | 44.0 | 4.47e-01 | 100.0% | 92.9% |
| 1888906 | 2002.1.1.39 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_3 | 0.52 | 44.0 | 3.30e-01 | 94.4% | 74.4% |
D2
high
residues 185-303
Domain cluster:
rep: MG592415.1__AUR83112.1__NVP1031O_130__00130__D624-731
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2o5iN07 | 1.10.132.30 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain | 0.78 | 60.0 | 6.06e-01 | 79.8% | 98.3% |
| 4bhxB00 | 1.10.4020.10 | Mainly Alpha › Orthogonal Bundle › DNA breaking-rejoining enzymes fold › DNA breaking-rejoining enzymes | 0.64 | 33.0 | 3.66e-01 | 74.8% | 62.0% |
| 4nv0A02 | 1.10.150.340 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Pyrimidine 5'-nucleotidase (UMPH-1), N-terminal domain | 0.62 | 34.0 | 4.08e-01 | 79.8% | 79.3% |
| 1dd5A01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.61 | 43.0 | 4.44e-01 | 71.4% | 93.6% |
| 2gb7D00 | 3.40.91.80 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.57 | 50.0 | 3.85e-01 | 100.0% | 66.8% |
| 2bnxB01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.54 | 47.0 | 3.76e-01 | 95.0% | 70.8% |
| 1b48A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.51 | 37.0 | 3.92e-01 | 75.6% | 90.8% |
| 5c4yA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 40.0 | 3.84e-01 | 96.6% | 72.8% |
| 1gwiA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.51 | 44.0 | 3.13e-01 | 99.2% | 49.3% |
| 2r8bA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.50 | 43.0 | 3.67e-01 | 95.0% | 78.9% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3844117 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.63 | 35.0 | 3.78e-01 | 92.4% | 63.0% |
| 4010684 | 3615.1.1.0 ↗ | alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain | 0.60 | 45.0 | 3.19e-01 | 80.7% | 43.8% |
| 3583240 | 633.24.1.4 ↗ | alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain › RIN1 | 0.59 | 48.0 | 4.80e-01 | 86.6% | 95.0% |
| 3243368 | 633.24.1.4 ↗ | alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain › RIN1 | 0.58 | 47.0 | 4.98e-01 | 86.6% | 98.1% |
| 4400236 | 170.1.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C | 0.58 | 41.0 | 4.30e-01 | 88.2% | 81.0% |
| 3472115 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.58 | 45.0 | 4.52e-01 | 84.0% | 96.0% |
| 3735962 | 130.1.2.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › ribosome-binding domain of Mdm38 | 0.58 | 43.0 | 3.59e-01 | 79.0% | 44.5% |
| 3924658 | 5073.1.2.8 ↗ | alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Copper efflux ATPase transmembrane domain › SFXNs | 0.57 | 43.0 | 3.41e-01 | 79.0% | 62.4% |
| 4034613 | 5058.1.1.4 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › COX4_pro | 0.55 | 38.0 | 4.25e-01 | 96.6% | 93.3% |
| 3701783 | 3651.1.1.0 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain | 0.53 | 37.0 | 4.18e-01 | 79.0% | 98.8% |
| 3429256 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.53 | 40.0 | 2.86e-01 | 80.7% | 100.0% |
| 3476364 | 2006.1.1.9 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › UMPH-1 | 0.51 | 42.0 | 3.14e-01 | 89.1% | 57.7% |