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term1_saliva_scaffold_3_curated_closed_complete_prodigal-single.1__X__X__00206
Bact-Virterm1_saliva_scaffold_3_curated_closed_complete_prodigal-single.1__X__X__00206
Identity
- Kingdom:
- phage
Quality
86.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 36-73
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vziA01 | 2.20.28.100 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › Desulphoferrodoxin, N-terminal domain | 0.67 | 52.0 | 5.23e-01 | 100.0% | 86.8% |
| 4fmrB01 | 2.70.50.70 | Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › | 0.66 | 55.0 | 3.75e-01 | 100.0% | 29.5% |
| 4pofA03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.62 | 53.0 | 4.93e-01 | 100.0% | 86.0% |
| 2ff4A03 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.62 | 52.0 | 3.93e-01 | 100.0% | 92.9% |
| 6nw1A00 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.60 | 49.0 | 4.69e-01 | 97.4% | 97.8% |
| 1wzlA04 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.59 | 47.0 | 3.68e-01 | 97.4% | 41.0% |
| 2apoB00 | 2.20.28.40 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › H/ACA ribonucleoprotein complex, subunit Nop10 | 0.59 | 40.0 | 3.56e-01 | 97.4% | 49.1% |
| 4tpuA02 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.57 | 45.0 | 4.58e-01 | 97.4% | 91.9% |
| 2k2dA00 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.55 | 44.0 | 4.21e-01 | 100.0% | 74.5% |
| 4id8A00 | 3.30.70.20 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 43.0 | 3.81e-01 | 100.0% | 98.5% |
| 2bc0A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.54 | 39.0 | 2.56e-01 | 86.8% | 81.1% |
| 2lcqA02 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.54 | 40.0 | 4.07e-01 | 100.0% | 84.2% |
| 2j9uB00 | 2.30.30.380 | Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 | 0.52 | 41.0 | 4.01e-01 | 100.0% | 97.9% |
| 4oifA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.52 | 36.0 | 3.17e-01 | 97.4% | 46.8% |
| 2xjyA01 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.50 | 33.0 | 2.83e-01 | 92.1% | 39.7% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4965365 | 375.1.1.336 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7129 | 0.66 | 49.0 | 5.31e-01 | 94.7% | 100.0% |
| 4390953 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.64 | 46.0 | 4.86e-01 | 100.0% | 100.0% |
| 4956457 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.63 | 54.0 | 5.03e-01 | 100.0% | 76.0% |
| 5049453 | 4333.1.1.2 ↗ | a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › TaqI_C | 0.63 | 46.0 | 2.81e-01 | 100.0% | 11.9% |
| 3315674 | 375.1.1.178 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn-ribbon_GIR1 | 0.62 | 46.0 | 4.79e-01 | 97.4% | 91.4% |
| 4469129 | 301.9.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › HypA Ni-binding domain › HypA Ni-binding domain › HypA | 0.62 | 47.0 | 3.40e-01 | 100.0% | 28.7% |
| 4163860 | 375.1.1.199 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MJ0401 | 0.61 | 49.0 | 4.67e-01 | 97.4% | 77.8% |
| 4322207 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.61 | 49.0 | 5.09e-01 | 97.4% | 100.0% |
| 4504924 | 301.9.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › HypA Ni-binding domain › HypA Ni-binding domain › HypA | 0.60 | 47.0 | 3.36e-01 | 100.0% | 29.2% |
| 4379241 | 375.1.1.8 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › HypA | 0.60 | 46.0 | 4.63e-01 | 100.0% | 85.0% |
| 4121492 | 375.1.1.1 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › tRNA-synt_1 | 0.60 | 49.0 | 2.84e-01 | 100.0% | 10.6% |
| 4262527 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.60 | 46.0 | 4.74e-01 | 100.0% | 94.3% |
| 4249891 | 375.1.1.8 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › HypA | 0.60 | 45.0 | 4.46e-01 | 100.0% | 82.5% |
| 4992102 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.59 | 46.0 | 4.77e-01 | 100.0% | 94.3% |
| 5027281 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.59 | 47.0 | 4.10e-01 | 100.0% | 58.6% |
| 3604642 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.59 | 50.0 | 4.80e-01 | 100.0% | 86.7% |
| 3245312 | 375.1.1.51 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_9 | 0.59 | 45.0 | 4.56e-01 | 100.0% | 97.1% |
| 5013997 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.58 | 45.0 | 4.33e-01 | 100.0% | 73.3% |
| 4607892 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.58 | 46.0 | 4.54e-01 | 100.0% | 85.0% |
| 4302823 | 375.1.1.93 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › A2L_zn_ribbon | 0.58 | 44.0 | 4.49e-01 | 100.0% | 94.3% |
| 4967717 | 375.1.1.181 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PALP | 0.58 | 44.0 | 4.57e-01 | 100.0% | 91.4% |
| 3933289 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.57 | 45.0 | 4.34e-01 | 100.0% | 77.8% |
| 4008953 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.56 | 43.0 | 4.46e-01 | 97.4% | 94.3% |
| 5072403 | 375.5.1.0 ↗ | few secondary structure elements › Rubredoxin-like › NOB1 zinc finger-like › NOB1 zinc finger-like | 0.56 | 43.0 | 4.18e-01 | 100.0% | 75.6% |
| 3385707 | 375.1.1.59 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rubredoxin_2 | 0.56 | 40.0 | 4.32e-01 | 94.7% | 100.0% |
| 3838150 | 375.1.1.59 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rubredoxin_2 | 0.56 | 42.0 | 4.05e-01 | 100.0% | 71.1% |
| 4325327 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.56 | 44.0 | 4.51e-01 | 100.0% | 97.1% |
| 3177841 | 221.1.1.52 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_2 | 0.56 | 43.0 | 3.53e-01 | 100.0% | 45.6% |
| 3414926 | 375.1.1.45 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Mcm10 | 0.56 | 44.0 | 4.58e-01 | 100.0% | 100.0% |
| 3906762 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.56 | 44.0 | 4.59e-01 | 100.0% | 97.1% |
| 5017094 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.55 | 42.0 | 3.82e-01 | 100.0% | 58.2% |
| 4024048 | 375.1.1.22 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DNA_RNApol_7kD | 0.55 | 41.0 | 3.90e-01 | 97.4% | 68.8% |
| 4931152 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.55 | 43.0 | 4.47e-01 | 100.0% | 91.4% |
| 3243669 | 4076.2.1.0 ↗ | a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like | 0.54 | 45.0 | 3.99e-01 | 100.0% | 68.3% |
| 4099119 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.54 | 38.0 | 3.99e-01 | 92.1% | 100.0% |
| 3791580 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.52 | 38.0 | 3.62e-01 | 81.6% | 79.2% |
| 3442989 | 2.1.1.42 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C | 0.52 | 39.0 | 2.65e-01 | 86.8% | 35.3% |
| 3924201 | 375.10.1.2 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DPOE | 0.52 | 37.0 | 3.20e-01 | 97.4% | 45.3% |
| 3188197 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.52 | 39.0 | 4.10e-01 | 94.7% | 97.1% |
| 3733979 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.52 | 42.0 | 4.16e-01 | 100.0% | 92.5% |
| 5027043 | 375.1.1.12 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_S27e | 0.52 | 39.0 | 3.82e-01 | 92.1% | 97.8% |
| 4952487 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.51 | 36.0 | 3.45e-01 | 100.0% | 64.4% |
| 4155736 | 375.1.1.6 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_L40e | 0.50 | 39.0 | 3.45e-01 | 97.4% | 55.9% |
| 3598347 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.50 | 40.0 | 3.88e-01 | 100.0% | 86.7% |